miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 35928 0.66 0.988134
Target:  5'- aCCGCCGuggcgcgcACGUagcGCUGCAGGUgaaccccgcucGCACGc -3'
miRNA:   3'- cGGCGGCu-------UGCA---UGGUGUCCA-----------UGUGC- -5'
30197 5' -54 NC_006273.1 + 84862 0.66 0.989494
Target:  5'- gGCCGUCaGggUGgagggcuugGCCACGGGagcuguugGCACGu -3'
miRNA:   3'- -CGGCGG-CuuGCa--------UGGUGUCCa-------UGUGC- -5'
30197 5' -54 NC_006273.1 + 105537 0.66 0.988134
Target:  5'- aGCC-CCG-ACGUGCCuCGGG-AgGCGg -3'
miRNA:   3'- -CGGcGGCuUGCAUGGuGUCCaUgUGC- -5'
30197 5' -54 NC_006273.1 + 87970 0.66 0.986643
Target:  5'- -aCGCCGGACGccgcgccgacGCCACuGG-GCGCGa -3'
miRNA:   3'- cgGCGGCUUGCa---------UGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 142072 0.66 0.986643
Target:  5'- cGCCGCC-AGCGgcgacgguUACCACGGcuUGCGCu -3'
miRNA:   3'- -CGGCGGcUUGC--------AUGGUGUCc-AUGUGc -5'
30197 5' -54 NC_006273.1 + 196986 0.66 0.985011
Target:  5'- aGCCGUaCGGAgGcGCCGgCGGGaGCGCGa -3'
miRNA:   3'- -CGGCG-GCUUgCaUGGU-GUCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 41557 0.66 0.989494
Target:  5'- cGgCGCCGAACGUcaACguCGGuugcucgaacuuGUACGCGg -3'
miRNA:   3'- -CgGCGGCUUGCA--UGguGUC------------CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 71695 0.66 0.985011
Target:  5'- gGCCGCCG-ACGUGgCAgGcGGUcuguuuaaccaGCGCGc -3'
miRNA:   3'- -CGGCGGCuUGCAUgGUgU-CCA-----------UGUGC- -5'
30197 5' -54 NC_006273.1 + 196276 0.66 0.987701
Target:  5'- cGCCGCgGGacGCGUggaucgugcuggugGCgACcguGGUGCACGa -3'
miRNA:   3'- -CGGCGgCU--UGCA--------------UGgUGu--CCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 178490 0.66 0.985011
Target:  5'- uGUCGuCCGuguCGU-CCaACAGGUugACGg -3'
miRNA:   3'- -CGGC-GGCuu-GCAuGG-UGUCCAugUGC- -5'
30197 5' -54 NC_006273.1 + 82596 0.66 0.990728
Target:  5'- -gCGCCaGAGCGUGCaaACGGGcgUGCugGg -3'
miRNA:   3'- cgGCGG-CUUGCAUGg-UGUCC--AUGugC- -5'
30197 5' -54 NC_006273.1 + 155470 0.66 0.989494
Target:  5'- uGUCGCCGGcgcagACGUACaCGCucgaGGGcUACACc -3'
miRNA:   3'- -CGGCGGCU-----UGCAUG-GUG----UCC-AUGUGc -5'
30197 5' -54 NC_006273.1 + 230279 0.66 0.989494
Target:  5'- uGCCGuucacuuuuCCGuuuuACGUGCCGC-GGUccuaGCACGu -3'
miRNA:   3'- -CGGC---------GGCu---UGCAUGGUGuCCA----UGUGC- -5'
30197 5' -54 NC_006273.1 + 43869 0.66 0.988134
Target:  5'- cGCCGCCGAcCGaUACCGCguucuucauaAGcGUACcuACGc -3'
miRNA:   3'- -CGGCGGCUuGC-AUGGUG----------UC-CAUG--UGC- -5'
30197 5' -54 NC_006273.1 + 37891 0.66 0.989494
Target:  5'- uGgCGCCGGGCcu-CgCGCAGGUcucGCACGc -3'
miRNA:   3'- -CgGCGGCUUGcauG-GUGUCCA---UGUGC- -5'
30197 5' -54 NC_006273.1 + 71855 0.66 0.986169
Target:  5'- cGCaCGCC--GCGUACCaccacaguggagucGCAGGUGCGu- -3'
miRNA:   3'- -CG-GCGGcuUGCAUGG--------------UGUCCAUGUgc -5'
30197 5' -54 NC_006273.1 + 137050 0.66 0.988134
Target:  5'- cGCCuGCC--ACGUGCCAC-GGaACAUGu -3'
miRNA:   3'- -CGG-CGGcuUGCAUGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 162793 0.66 0.985011
Target:  5'- aGCgGCCGcAUGUcgcuGCCGCuGG-ACACGu -3'
miRNA:   3'- -CGgCGGCuUGCA----UGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 112253 0.66 0.989494
Target:  5'- uGgCGCgaGGACGUGCuCAUggaccGGGUGCGCa -3'
miRNA:   3'- -CgGCGg-CUUGCAUG-GUG-----UCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 103899 0.66 0.985011
Target:  5'- aGUCGCgGcgguuGCGcGCCACGGcGUACGCc -3'
miRNA:   3'- -CGGCGgCu----UGCaUGGUGUC-CAUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.