miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 82743 0.66 0.985011
Target:  5'- gGCgGCCGAGCGgg-CGCAauuuGUACGCGc -3'
miRNA:   3'- -CGgCGGCUUGCaugGUGUc---CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 108398 0.66 0.985011
Target:  5'- gGCCGCCaccGCGgucuCCACgucAGGUACgACGu -3'
miRNA:   3'- -CGGCGGcu-UGCau--GGUG---UCCAUG-UGC- -5'
30197 5' -54 NC_006273.1 + 115452 0.66 0.985011
Target:  5'- uGCCGCUGGaccGCGUGCCcguuaGCGGacUGCACc -3'
miRNA:   3'- -CGGCGGCU---UGCAUGG-----UGUCc-AUGUGc -5'
30197 5' -54 NC_006273.1 + 133110 0.66 0.985011
Target:  5'- cGCCGCCacGCGUcauUCuCAGcGUACGCGa -3'
miRNA:   3'- -CGGCGGcuUGCAu--GGuGUC-CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 147697 0.66 0.989494
Target:  5'- cGCCGCUGAccacCGccACCACccGUACACc -3'
miRNA:   3'- -CGGCGGCUu---GCa-UGGUGucCAUGUGc -5'
30197 5' -54 NC_006273.1 + 184583 0.66 0.99061
Target:  5'- cGCgGCCGAuauagaaguaguuGCGUugaaaACCGC-GGUACAUc -3'
miRNA:   3'- -CGgCGGCU-------------UGCA-----UGGUGuCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 230279 0.66 0.989494
Target:  5'- uGCCGuucacuuuuCCGuuuuACGUGCCGC-GGUccuaGCACGu -3'
miRNA:   3'- -CGGC---------GGCu---UGCAUGGUGuCCA----UGUGC- -5'
30197 5' -54 NC_006273.1 + 35928 0.66 0.988134
Target:  5'- aCCGCCGuggcgcgcACGUagcGCUGCAGGUgaaccccgcucGCACGc -3'
miRNA:   3'- cGGCGGCu-------UGCA---UGGUGUCCA-----------UGUGC- -5'
30197 5' -54 NC_006273.1 + 37891 0.66 0.989494
Target:  5'- uGgCGCCGGGCcu-CgCGCAGGUcucGCACGc -3'
miRNA:   3'- -CgGCGGCUUGcauG-GUGUCCA---UGUGC- -5'
30197 5' -54 NC_006273.1 + 155470 0.66 0.989494
Target:  5'- uGUCGCCGGcgcagACGUACaCGCucgaGGGcUACACc -3'
miRNA:   3'- -CGGCGGCU-----UGCAUG-GUG----UCC-AUGUGc -5'
30197 5' -54 NC_006273.1 + 1383 0.66 0.987701
Target:  5'- cGCCGCgGGacGCGUggaucgugcuggugGCgACcguGGUGCACGa -3'
miRNA:   3'- -CGGCGgCU--UGCA--------------UGgUGu--CCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 164484 0.66 0.986643
Target:  5'- gGCUGCUGAAcuCGUGCgAUGGGUG-GCGg -3'
miRNA:   3'- -CGGCGGCUU--GCAUGgUGUCCAUgUGC- -5'
30197 5' -54 NC_006273.1 + 17821 0.66 0.985181
Target:  5'- cGCCGCCGAA---GCCugGGGcaccuaucuccgacaGCGCGa -3'
miRNA:   3'- -CGGCGGCUUgcaUGGugUCCa--------------UGUGC- -5'
30197 5' -54 NC_006273.1 + 144713 0.66 0.986643
Target:  5'- uGgCGCCacauaAGCGcUACUugGGGUACAUGa -3'
miRNA:   3'- -CgGCGGc----UUGC-AUGGugUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 234604 0.66 0.989494
Target:  5'- uCCGUCGuccgUGUGCCACGGcagACACGc -3'
miRNA:   3'- cGGCGGCuu--GCAUGGUGUCca-UGUGC- -5'
30197 5' -54 NC_006273.1 + 129763 0.66 0.990728
Target:  5'- aCCGaacCCGAGCGUGUCAagcuGGUACugGg -3'
miRNA:   3'- cGGC---GGCUUGCAUGGUgu--CCAUGugC- -5'
30197 5' -54 NC_006273.1 + 2093 0.66 0.985011
Target:  5'- aGCCGUaCGGAgGcGCCGgCGGGaGCGCGa -3'
miRNA:   3'- -CGGCG-GCUUgCaUGGU-GUCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 208801 0.66 0.990728
Target:  5'- -aCGCCGAugGgcgcugugGCgCACAGGUugAg- -3'
miRNA:   3'- cgGCGGCUugCa-------UG-GUGUCCAugUgc -5'
30197 5' -54 NC_006273.1 + 155438 0.66 0.989494
Target:  5'- aCCGCCGc-CGUGCC-CGGcG-ACGCGg -3'
miRNA:   3'- cGGCGGCuuGCAUGGuGUC-CaUGUGC- -5'
30197 5' -54 NC_006273.1 + 82596 0.66 0.990728
Target:  5'- -gCGCCaGAGCGUGCaaACGGGcgUGCugGg -3'
miRNA:   3'- cgGCGG-CUUGCAUGg-UGUCC--AUGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.