miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 190757 1.1 0.006671
Target:  5'- uGCCGCCGAACGUACCACAGGUACACGu -3'
miRNA:   3'- -CGGCGGCUUGCAUGGUGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 169572 0.84 0.268369
Target:  5'- cGCCGCCGAuuGCGgACCGCAGGggcgACGCa -3'
miRNA:   3'- -CGGCGGCU--UGCaUGGUGUCCa---UGUGc -5'
30197 5' -54 NC_006273.1 + 179960 0.81 0.381547
Target:  5'- uGCuCGCUGAACGUGCUGCAGGUAUuugugguGCGg -3'
miRNA:   3'- -CG-GCGGCUUGCAUGGUGUCCAUG-------UGC- -5'
30197 5' -54 NC_006273.1 + 188552 0.8 0.441417
Target:  5'- aGCaCGCCGAAUGUuacaucgucggcGCC-CAGGUGCACGc -3'
miRNA:   3'- -CG-GCGGCUUGCA------------UGGuGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 58684 0.79 0.486623
Target:  5'- gGCUGCUauuGGgucacagccGCGUGCCGCGGGUGCGCGc -3'
miRNA:   3'- -CGGCGG---CU---------UGCAUGGUGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 221327 0.79 0.502491
Target:  5'- gGCCGCCGAuaguuaccggagagACGUucgaGCUGCAGGUACAuCGg -3'
miRNA:   3'- -CGGCGGCU--------------UGCA----UGGUGUCCAUGU-GC- -5'
30197 5' -54 NC_006273.1 + 202625 0.77 0.572866
Target:  5'- cGCCGCCGAcuCGcUGCCGCAGuUGCugGa -3'
miRNA:   3'- -CGGCGGCUu-GC-AUGGUGUCcAUGugC- -5'
30197 5' -54 NC_006273.1 + 204706 0.77 0.602521
Target:  5'- aGCCGCCGGcaccGCGgccgGCCGCAGGaagccgcccgGCGCGu -3'
miRNA:   3'- -CGGCGGCU----UGCa---UGGUGUCCa---------UGUGC- -5'
30197 5' -54 NC_006273.1 + 199426 0.75 0.672109
Target:  5'- aGCCGCgCGAGCGUGCgaGCGGGguuCACc -3'
miRNA:   3'- -CGGCG-GCUUGCAUGg-UGUCCau-GUGc -5'
30197 5' -54 NC_006273.1 + 118416 0.75 0.681989
Target:  5'- uGCUGCCGcAGCGcUGCCACu-GUGCACGu -3'
miRNA:   3'- -CGGCGGC-UUGC-AUGGUGucCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 46073 0.75 0.721035
Target:  5'- cCCGCCGAc---GCCGCAGGUGcCGCGg -3'
miRNA:   3'- cGGCGGCUugcaUGGUGUCCAU-GUGC- -5'
30197 5' -54 NC_006273.1 + 186031 0.74 0.749591
Target:  5'- cGCUGCCGuuuuuUGcGCCguGCGGGUGCACGg -3'
miRNA:   3'- -CGGCGGCuu---GCaUGG--UGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 38340 0.74 0.749591
Target:  5'- cGCCGCCGucGCGUccgccccgACCACcGcGUGCGCGu -3'
miRNA:   3'- -CGGCGGCu-UGCA--------UGGUGuC-CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 233233 0.74 0.749591
Target:  5'- cGCCGCCGucGCGUccgccccgACCACcGcGUGCGCGu -3'
miRNA:   3'- -CGGCGGCu-UGCA--------UGGUGuC-CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 37216 0.74 0.768155
Target:  5'- cGCgGCCGAcgcGCGUGCC-CAGGcagaggaagGCGCGa -3'
miRNA:   3'- -CGgCGGCU---UGCAUGGuGUCCa--------UGUGC- -5'
30197 5' -54 NC_006273.1 + 167679 0.73 0.786259
Target:  5'- gGCCGCCGuuCGUcGUCACGGGgcgGCGCGa -3'
miRNA:   3'- -CGGCGGCuuGCA-UGGUGUCCa--UGUGC- -5'
30197 5' -54 NC_006273.1 + 102837 0.73 0.795119
Target:  5'- gGCgCGCCGGccGCGU-CCACGGGcACGCu -3'
miRNA:   3'- -CG-GCGGCU--UGCAuGGUGUCCaUGUGc -5'
30197 5' -54 NC_006273.1 + 158769 0.73 0.812413
Target:  5'- gGCCGCCGGcCGcgGCCACGG--ACGCGu -3'
miRNA:   3'- -CGGCGGCUuGCa-UGGUGUCcaUGUGC- -5'
30197 5' -54 NC_006273.1 + 174268 0.73 0.812413
Target:  5'- aGCUGCCGAGCGaccaugaGCCGCuGGagGCAUGg -3'
miRNA:   3'- -CGGCGGCUUGCa------UGGUGuCCa-UGUGC- -5'
30197 5' -54 NC_006273.1 + 137282 0.72 0.820831
Target:  5'- cCCGCCGAACGgACUu--GGUACGCu -3'
miRNA:   3'- cGGCGGCUUGCaUGGuguCCAUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.