miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 164270 0.72 0.829087
Target:  5'- uGCCGCCGucggucgaucAgGUACuCGCAGGUguGCGCGu -3'
miRNA:   3'- -CGGCGGCu---------UgCAUG-GUGUCCA--UGUGC- -5'
30197 5' -54 NC_006273.1 + 13584 0.72 0.837173
Target:  5'- cCCGCCGGGCGgcccggGCCGCc-GUGCugGa -3'
miRNA:   3'- cGGCGGCUUGCa-----UGGUGucCAUGugC- -5'
30197 5' -54 NC_006273.1 + 74627 0.72 0.837173
Target:  5'- aGUCGCCGugcACGUACUugAGGaAgGCGg -3'
miRNA:   3'- -CGGCGGCu--UGCAUGGugUCCaUgUGC- -5'
30197 5' -54 NC_006273.1 + 121815 0.72 0.845083
Target:  5'- gGCCGCCG-ACGgg-UAguGGUGCACGu -3'
miRNA:   3'- -CGGCGGCuUGCaugGUguCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 36778 0.72 0.85281
Target:  5'- aGCaCGCCGAggcccagugGCG-GCaGCAGGUGCACGc -3'
miRNA:   3'- -CG-GCGGCU---------UGCaUGgUGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 69832 0.72 0.860348
Target:  5'- cGCCGCCGAGaaaGUccCCGCGGaGUGCcCGa -3'
miRNA:   3'- -CGGCGGCUUg--CAu-GGUGUC-CAUGuGC- -5'
30197 5' -54 NC_006273.1 + 184118 0.72 0.860348
Target:  5'- uGCCGCgGuuuuuugucGCGU-CCACGGGcUGCGCGg -3'
miRNA:   3'- -CGGCGgCu--------UGCAuGGUGUCC-AUGUGC- -5'
30197 5' -54 NC_006273.1 + 72791 0.71 0.867691
Target:  5'- aGCCGCuCGGGCGgguagaGCCGCAGacgGCGCa -3'
miRNA:   3'- -CGGCG-GCUUGCa-----UGGUGUCca-UGUGc -5'
30197 5' -54 NC_006273.1 + 196686 0.71 0.874833
Target:  5'- uGCaGCCGAugGUGCUGCuGG-GCGCGu -3'
miRNA:   3'- -CGgCGGCUugCAUGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 1794 0.71 0.874833
Target:  5'- uGCaGCCGAugGUGCUGCuGG-GCGCGu -3'
miRNA:   3'- -CGgCGGCUugCAUGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 110539 0.71 0.874833
Target:  5'- uGCCGCCGcucuuccACGgACCGCuGGcGCGCGa -3'
miRNA:   3'- -CGGCGGCu------UGCaUGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 52566 0.71 0.874833
Target:  5'- cGCCGCCGu---UGCCACAGGaAC-CGg -3'
miRNA:   3'- -CGGCGGCuugcAUGGUGUCCaUGuGC- -5'
30197 5' -54 NC_006273.1 + 177258 0.71 0.88177
Target:  5'- gGCCGCUGcGCGUGCC-CGuGGUgaauuACGCGu -3'
miRNA:   3'- -CGGCGGCuUGCAUGGuGU-CCA-----UGUGC- -5'
30197 5' -54 NC_006273.1 + 205361 0.71 0.89501
Target:  5'- gGCCGCCGGGCuggaaccuaGUGCUGCAGGagaucgAgACGg -3'
miRNA:   3'- -CGGCGGCUUG---------CAUGGUGUCCa-----UgUGC- -5'
30197 5' -54 NC_006273.1 + 101903 0.71 0.89501
Target:  5'- gGCCGCCGccAGCGU-CCGCGccUGCACGc -3'
miRNA:   3'- -CGGCGGC--UUGCAuGGUGUccAUGUGC- -5'
30197 5' -54 NC_006273.1 + 150792 0.71 0.89501
Target:  5'- aGCCgGCCGAagcuuucgcgcACGUucACCGCgucuAGGUACugGa -3'
miRNA:   3'- -CGG-CGGCU-----------UGCA--UGGUG----UCCAUGugC- -5'
30197 5' -54 NC_006273.1 + 160130 0.71 0.897555
Target:  5'- gGCCGCCGcGGCGgccagcgcuucguCCAUAGGUacuugACGCGg -3'
miRNA:   3'- -CGGCGGC-UUGCau-----------GGUGUCCA-----UGUGC- -5'
30197 5' -54 NC_006273.1 + 204012 0.7 0.907381
Target:  5'- uGCCGaCCucggacccagGGACGUAuCCACcucAGGUACACa -3'
miRNA:   3'- -CGGC-GG----------CUUGCAU-GGUG---UCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 13284 0.7 0.907381
Target:  5'- aGCCGUacUGAGCGUGCgagGCGGGUAgGCu -3'
miRNA:   3'- -CGGCG--GCUUGCAUGg--UGUCCAUgUGc -5'
30197 5' -54 NC_006273.1 + 31349 0.7 0.907381
Target:  5'- aGCCuGCUGugUGUACCugAGGUggAUACGu -3'
miRNA:   3'- -CGG-CGGCuuGCAUGGugUCCA--UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.