miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 196986 0.66 0.985011
Target:  5'- aGCCGUaCGGAgGcGCCGgCGGGaGCGCGa -3'
miRNA:   3'- -CGGCG-GCUUgCaUGGU-GUCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 71695 0.66 0.985011
Target:  5'- gGCCGCCG-ACGUGgCAgGcGGUcuguuuaaccaGCGCGc -3'
miRNA:   3'- -CGGCGGCuUGCAUgGUgU-CCA-----------UGUGC- -5'
30197 5' -54 NC_006273.1 + 103899 0.66 0.985011
Target:  5'- aGUCGCgGcgguuGCGcGCCACGGcGUACGCc -3'
miRNA:   3'- -CGGCGgCu----UGCaUGGUGUC-CAUGUGc -5'
30197 5' -54 NC_006273.1 + 115452 0.66 0.985011
Target:  5'- uGCCGCUGGaccGCGUGCCcguuaGCGGacUGCACc -3'
miRNA:   3'- -CGGCGGCU---UGCAUGG-----UGUCc-AUGUGc -5'
30197 5' -54 NC_006273.1 + 133110 0.66 0.985011
Target:  5'- cGCCGCCacGCGUcauUCuCAGcGUACGCGa -3'
miRNA:   3'- -CGGCGGcuUGCAu--GGuGUC-CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 82743 0.66 0.985011
Target:  5'- gGCgGCCGAGCGgg-CGCAauuuGUACGCGc -3'
miRNA:   3'- -CGgCGGCUUGCaugGUGUc---CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 142802 0.67 0.983962
Target:  5'- aGCCGCCGucgcuggugggcacgGGCGUgcACCGC-GGUcugcuCACGg -3'
miRNA:   3'- -CGGCGGC---------------UUGCA--UGGUGuCCAu----GUGC- -5'
30197 5' -54 NC_006273.1 + 30664 0.67 0.983962
Target:  5'- -gCGCCGGGCGgcuuccugcggccgGCCGC-GGUGCcgGCGg -3'
miRNA:   3'- cgGCGGCUUGCa-------------UGGUGuCCAUG--UGC- -5'
30197 5' -54 NC_006273.1 + 100434 0.67 0.983232
Target:  5'- aGCCGuUUGAGCGUGCUGCAauGGU-CGCc -3'
miRNA:   3'- -CGGC-GGCUUGCAUGGUGU--CCAuGUGc -5'
30197 5' -54 NC_006273.1 + 141723 0.67 0.983232
Target:  5'- cGCCGCCauuGCGUcguCCcaGCAGG-GCGCGc -3'
miRNA:   3'- -CGGCGGcu-UGCAu--GG--UGUCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 213199 0.67 0.983232
Target:  5'- uGCUGCCGcuuACG-ACCGCugucggucuaAGGUAgGCGu -3'
miRNA:   3'- -CGGCGGCu--UGCaUGGUG----------UCCAUgUGC- -5'
30197 5' -54 NC_006273.1 + 216774 0.67 0.983232
Target:  5'- aGCCcacgagGCCGAcgACGUACCACucgcagcacaAGcGUugACGa -3'
miRNA:   3'- -CGG------CGGCU--UGCAUGGUG----------UC-CAugUGC- -5'
30197 5' -54 NC_006273.1 + 26122 0.67 0.983232
Target:  5'- cGCCGCCGGGC--GCUGCGGucccgACAUGg -3'
miRNA:   3'- -CGGCGGCUUGcaUGGUGUCca---UGUGC- -5'
30197 5' -54 NC_006273.1 + 16470 0.67 0.983232
Target:  5'- gGCCGCCu-GCGUuggcgaacACCACGG--ACGCGa -3'
miRNA:   3'- -CGGCGGcuUGCA--------UGGUGUCcaUGUGC- -5'
30197 5' -54 NC_006273.1 + 50779 0.67 0.983232
Target:  5'- aCUGCgGGAUGUACCGC-GGUuuucaACGCa -3'
miRNA:   3'- cGGCGgCUUGCAUGGUGuCCA-----UGUGc -5'
30197 5' -54 NC_006273.1 + 684 0.67 0.983232
Target:  5'- gGCUGCCGggUGguuuuCCACGGccuuccagacUGCACGg -3'
miRNA:   3'- -CGGCGGCuuGCau---GGUGUCc---------AUGUGC- -5'
30197 5' -54 NC_006273.1 + 125014 0.67 0.981298
Target:  5'- gGCCGCgcaguCGuACGUaGCCGCGGGUGugaucUACGa -3'
miRNA:   3'- -CGGCG-----GCuUGCA-UGGUGUCCAU-----GUGC- -5'
30197 5' -54 NC_006273.1 + 190144 0.67 0.981298
Target:  5'- aGCCGCCGGGCGg--CACGGGcaagUGCu-- -3'
miRNA:   3'- -CGGCGGCUUGCaugGUGUCC----AUGugc -5'
30197 5' -54 NC_006273.1 + 33939 0.67 0.981298
Target:  5'- cGUCGCCGGcugugaggugGCGgaucGCCGgCAGGUgaaACGCGc -3'
miRNA:   3'- -CGGCGGCU----------UGCa---UGGU-GUCCA---UGUGC- -5'
30197 5' -54 NC_006273.1 + 56282 0.67 0.981298
Target:  5'- uCUGCUgGGGCGgguacgGCCGCGGGUGucCGCGg -3'
miRNA:   3'- cGGCGG-CUUGCa-----UGGUGUCCAU--GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.