miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 77 0.68 0.955791
Target:  5'- -gUGUCaGggUGUGCCGCGGGUGuguCGCGg -3'
miRNA:   3'- cgGCGG-CuuGCAUGGUGUCCAU---GUGC- -5'
30197 5' -54 NC_006273.1 + 580 0.69 0.939117
Target:  5'- -aUGUCGGGCGU-CCACcuaggaGGGUGCGCGc -3'
miRNA:   3'- cgGCGGCUUGCAuGGUG------UCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 684 0.67 0.983232
Target:  5'- gGCUGCCGggUGguuuuCCACGGccuuccagacUGCACGg -3'
miRNA:   3'- -CGGCGGCuuGCau---GGUGUCc---------AUGUGC- -5'
30197 5' -54 NC_006273.1 + 1293 0.68 0.955417
Target:  5'- uGCCGCuCGGACGgccguacggauucUACgCGCGGGUgACGCc -3'
miRNA:   3'- -CGGCG-GCUUGC-------------AUG-GUGUCCA-UGUGc -5'
30197 5' -54 NC_006273.1 + 1383 0.66 0.987701
Target:  5'- cGCCGCgGGacGCGUggaucgugcuggugGCgACcguGGUGCACGa -3'
miRNA:   3'- -CGGCGgCU--UGCA--------------UGgUGu--CCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 1794 0.71 0.874833
Target:  5'- uGCaGCCGAugGUGCUGCuGG-GCGCGu -3'
miRNA:   3'- -CGgCGGCUugCAUGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 2025 0.68 0.969052
Target:  5'- gGCCGCCG-GCGgggACgCGCc-GUGCGCGa -3'
miRNA:   3'- -CGGCGGCuUGCa--UG-GUGucCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 2093 0.66 0.985011
Target:  5'- aGCCGUaCGGAgGcGCCGgCGGGaGCGCGa -3'
miRNA:   3'- -CGGCG-GCUUgCaUGGU-GUCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 10429 0.68 0.969052
Target:  5'- uCC-CCGGACu--CCAUAGGUGCAUGu -3'
miRNA:   3'- cGGcGGCUUGcauGGUGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 13284 0.7 0.907381
Target:  5'- aGCCGUacUGAGCGUGCgagGCGGGUAgGCu -3'
miRNA:   3'- -CGGCG--GCUUGCAUGg--UGUCCAUgUGc -5'
30197 5' -54 NC_006273.1 + 13584 0.72 0.837173
Target:  5'- cCCGCCGGGCGgcccggGCCGCc-GUGCugGa -3'
miRNA:   3'- cGGCGGCUUGCa-----UGGUGucCAUGugC- -5'
30197 5' -54 NC_006273.1 + 15617 0.68 0.969052
Target:  5'- aGCaGCCGAGCGcgagGCCGCuGGUcaucaggacgAUACGg -3'
miRNA:   3'- -CGgCGGCUUGCa---UGGUGuCCA----------UGUGC- -5'
30197 5' -54 NC_006273.1 + 16470 0.67 0.983232
Target:  5'- gGCCGCCu-GCGUuggcgaacACCACGG--ACGCGa -3'
miRNA:   3'- -CGGCGGcuUGCA--------UGGUGUCcaUGUGC- -5'
30197 5' -54 NC_006273.1 + 17821 0.66 0.985181
Target:  5'- cGCCGCCGAA---GCCugGGGcaccuaucuccgacaGCGCGa -3'
miRNA:   3'- -CGGCGGCUUgcaUGGugUCCa--------------UGUGC- -5'
30197 5' -54 NC_006273.1 + 18993 0.68 0.955791
Target:  5'- gGCCGCaCGGACcUAcugcCCACGGGcGCGCu -3'
miRNA:   3'- -CGGCG-GCUUGcAU----GGUGUCCaUGUGc -5'
30197 5' -54 NC_006273.1 + 19165 0.67 0.976935
Target:  5'- cGCCGCCc-AUGUGCCGCGcuccGUACaACGa -3'
miRNA:   3'- -CGGCGGcuUGCAUGGUGUc---CAUG-UGC- -5'
30197 5' -54 NC_006273.1 + 22256 0.67 0.971867
Target:  5'- cGCCGgCGAGCGacgcggcuCCGCcgucGGUGCGCu -3'
miRNA:   3'- -CGGCgGCUUGCau------GGUGu---CCAUGUGc -5'
30197 5' -54 NC_006273.1 + 26122 0.67 0.983232
Target:  5'- cGCCGCCGGGC--GCUGCGGucccgACAUGg -3'
miRNA:   3'- -CGGCGGCUUGcaUGGUGUCca---UGUGC- -5'
30197 5' -54 NC_006273.1 + 29273 0.68 0.966043
Target:  5'- cGCCGacaccCCGggUGUACUACcagacgcuggaGGGcUACGCGg -3'
miRNA:   3'- -CGGC-----GGCuuGCAUGGUG-----------UCC-AUGUGC- -5'
30197 5' -54 NC_006273.1 + 30664 0.67 0.983962
Target:  5'- -gCGCCGGGCGgcuuccugcggccgGCCGC-GGUGCcgGCGg -3'
miRNA:   3'- cgGCGGCUUGCa-------------UGGUGuCCAUG--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.