miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 31349 0.7 0.907381
Target:  5'- aGCCuGCUGugUGUACCugAGGUggAUACGu -3'
miRNA:   3'- -CGG-CGGCuuGCAUGGugUCCA--UGUGC- -5'
30197 5' -54 NC_006273.1 + 33762 0.68 0.959417
Target:  5'- cGCagcaGCCGAAUGauaCGCAGGgccaGCACGg -3'
miRNA:   3'- -CGg---CGGCUUGCaugGUGUCCa---UGUGC- -5'
30197 5' -54 NC_006273.1 + 33939 0.67 0.981298
Target:  5'- cGUCGCCGGcugugaggugGCGgaucGCCGgCAGGUgaaACGCGc -3'
miRNA:   3'- -CGGCGGCU----------UGCa---UGGU-GUCCA---UGUGC- -5'
30197 5' -54 NC_006273.1 + 34723 0.69 0.947895
Target:  5'- gGCCGCCagauccucGGGCGUGCgacacaACAGGccgGCGCGc -3'
miRNA:   3'- -CGGCGG--------CUUGCAUGg-----UGUCCa--UGUGC- -5'
30197 5' -54 NC_006273.1 + 35658 0.68 0.964783
Target:  5'- cUCGCCGAacgagagccccagcACGUacaccuuguccucGCCggGCAGGUACGCa -3'
miRNA:   3'- cGGCGGCU--------------UGCA-------------UGG--UGUCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 35928 0.66 0.988134
Target:  5'- aCCGCCGuggcgcgcACGUagcGCUGCAGGUgaaccccgcucGCACGc -3'
miRNA:   3'- cGGCGGCu-------UGCA---UGGUGUCCA-----------UGUGC- -5'
30197 5' -54 NC_006273.1 + 36778 0.72 0.85281
Target:  5'- aGCaCGCCGAggcccagugGCG-GCaGCAGGUGCACGc -3'
miRNA:   3'- -CG-GCGGCU---------UGCaUGgUGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 37216 0.74 0.768155
Target:  5'- cGCgGCCGAcgcGCGUGCC-CAGGcagaggaagGCGCGa -3'
miRNA:   3'- -CGgCGGCU---UGCAUGGuGUCCa--------UGUGC- -5'
30197 5' -54 NC_006273.1 + 37891 0.66 0.989494
Target:  5'- uGgCGCCGGGCcu-CgCGCAGGUcucGCACGc -3'
miRNA:   3'- -CgGCGGCUUGcauG-GUGUCCA---UGUGC- -5'
30197 5' -54 NC_006273.1 + 38083 0.68 0.955791
Target:  5'- aGCCGCCGcGCGgccucgGCgGCGGGcGC-CGa -3'
miRNA:   3'- -CGGCGGCuUGCa-----UGgUGUCCaUGuGC- -5'
30197 5' -54 NC_006273.1 + 38340 0.74 0.749591
Target:  5'- cGCCGCCGucGCGUccgccccgACCACcGcGUGCGCGu -3'
miRNA:   3'- -CGGCGGCu-UGCA--------UGGUGuC-CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 38392 0.67 0.974493
Target:  5'- cGCCGCCGucCGUcgccGCCGCugcGGUG-GCGg -3'
miRNA:   3'- -CGGCGGCuuGCA----UGGUGu--CCAUgUGC- -5'
30197 5' -54 NC_006273.1 + 39210 0.66 0.986643
Target:  5'- gGCCGuCCGAGCG-GCaGCAGcGUGCccGCGu -3'
miRNA:   3'- -CGGC-GGCUUGCaUGgUGUC-CAUG--UGC- -5'
30197 5' -54 NC_006273.1 + 39712 0.66 0.989494
Target:  5'- uCCGUCGuccgUGUGCCACGGcagACACGc -3'
miRNA:   3'- cGGCGGCuu--GCAUGGUGUCca-UGUGC- -5'
30197 5' -54 NC_006273.1 + 41557 0.66 0.989494
Target:  5'- cGgCGCCGAACGUcaACguCGGuugcucgaacuuGUACGCGg -3'
miRNA:   3'- -CgGCGGCUUGCA--UGguGUC------------CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 42211 0.69 0.939117
Target:  5'- gGCCGCCGAACGg---GCAGcGUGgGCu -3'
miRNA:   3'- -CGGCGGCUUGCauggUGUC-CAUgUGc -5'
30197 5' -54 NC_006273.1 + 42575 0.69 0.947895
Target:  5'- cGCgUGCCGAucACGcGCCGCAaGUGCGCu -3'
miRNA:   3'- -CG-GCGGCU--UGCaUGGUGUcCAUGUGc -5'
30197 5' -54 NC_006273.1 + 43869 0.66 0.988134
Target:  5'- cGCCGCCGAcCGaUACCGCguucuucauaAGcGUACcuACGc -3'
miRNA:   3'- -CGGCGGCUuGC-AUGGUG----------UC-CAUG--UGC- -5'
30197 5' -54 NC_006273.1 + 46073 0.75 0.721035
Target:  5'- cCCGCCGAc---GCCGCAGGUGcCGCGg -3'
miRNA:   3'- cGGCGGCUugcaUGGUGUCCAU-GUGC- -5'
30197 5' -54 NC_006273.1 + 46682 0.67 0.976935
Target:  5'- cGCaacaGCCGcGACGUAUUGCGGGaccUGCGCa -3'
miRNA:   3'- -CGg---CGGC-UUGCAUGGUGUCC---AUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.