miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 234908 0.68 0.955791
Target:  5'- -gUGUCaGggUGUGCCGCGGGUGuguCGCGg -3'
miRNA:   3'- cgGCGG-CuuGCAUGGUGUCCAU---GUGC- -5'
30197 5' -54 NC_006273.1 + 234604 0.66 0.989494
Target:  5'- uCCGUCGuccgUGUGCCACGGcagACACGc -3'
miRNA:   3'- cGGCGGCuu--GCAUGGUGUCca-UGUGC- -5'
30197 5' -54 NC_006273.1 + 234103 0.66 0.986643
Target:  5'- gGCCGuCCGAGCG-GCaGCAGcGUGCccGCGu -3'
miRNA:   3'- -CGGC-GGCUUGCaUGgUGUC-CAUG--UGC- -5'
30197 5' -54 NC_006273.1 + 233562 0.69 0.953514
Target:  5'- gGCCGUCGcguuGGCGcGCCaacaguaaggugacgACAGGUugGCGg -3'
miRNA:   3'- -CGGCGGC----UUGCaUGG---------------UGUCCAugUGC- -5'
30197 5' -54 NC_006273.1 + 233233 0.74 0.749591
Target:  5'- cGCCGCCGucGCGUccgccccgACCACcGcGUGCGCGu -3'
miRNA:   3'- -CGGCGGCu-UGCA--------UGGUGuC-CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 232976 0.68 0.955791
Target:  5'- aGCCGCCGcGCGgccucgGCgGCGGGcGC-CGa -3'
miRNA:   3'- -CGGCGGCuUGCa-----UGgUGUCCaUGuGC- -5'
30197 5' -54 NC_006273.1 + 230279 0.66 0.989494
Target:  5'- uGCCGuucacuuuuCCGuuuuACGUGCCGC-GGUccuaGCACGu -3'
miRNA:   3'- -CGGC---------GGCu---UGCAUGGUGuCCA----UGUGC- -5'
30197 5' -54 NC_006273.1 + 229541 0.66 0.989494
Target:  5'- -aUGaCCGGACGUGCUugGacuGGUACAUa -3'
miRNA:   3'- cgGC-GGCUUGCAUGGugU---CCAUGUGc -5'
30197 5' -54 NC_006273.1 + 221327 0.79 0.502491
Target:  5'- gGCCGCCGAuaguuaccggagagACGUucgaGCUGCAGGUACAuCGg -3'
miRNA:   3'- -CGGCGGCU--------------UGCA----UGGUGUCCAUGU-GC- -5'
30197 5' -54 NC_006273.1 + 216774 0.67 0.983232
Target:  5'- aGCCcacgagGCCGAcgACGUACCACucgcagcacaAGcGUugACGa -3'
miRNA:   3'- -CGG------CGGCU--UGCAUGGUG----------UC-CAugUGC- -5'
30197 5' -54 NC_006273.1 + 213625 0.67 0.977862
Target:  5'- aCUGCgcaaccuggagggauCGGGCGU-CCACAGGUAcCGCGu -3'
miRNA:   3'- cGGCG---------------GCUUGCAuGGUGUCCAU-GUGC- -5'
30197 5' -54 NC_006273.1 + 213199 0.67 0.983232
Target:  5'- uGCUGCCGcuuACG-ACCGCugucggucuaAGGUAgGCGu -3'
miRNA:   3'- -CGGCGGCu--UGCaUGGUG----------UCCAUgUGC- -5'
30197 5' -54 NC_006273.1 + 211225 0.69 0.939117
Target:  5'- gGCCGCCGAGaCGUuaGCCAUccaagaaauGGUAC-CGu -3'
miRNA:   3'- -CGGCGGCUU-GCA--UGGUGu--------CCAUGuGC- -5'
30197 5' -54 NC_006273.1 + 209683 0.66 0.989494
Target:  5'- cGCgGCCGAgaugaccaACGUACCGucCAGGcagagACAUa -3'
miRNA:   3'- -CGgCGGCU--------UGCAUGGU--GUCCa----UGUGc -5'
30197 5' -54 NC_006273.1 + 208801 0.66 0.990728
Target:  5'- -aCGCCGAugGgcgcugugGCgCACAGGUugAg- -3'
miRNA:   3'- cgGCGGCUugCa-------UG-GUGUCCAugUgc -5'
30197 5' -54 NC_006273.1 + 205361 0.71 0.89501
Target:  5'- gGCCGCCGGGCuggaaccuaGUGCUGCAGGagaucgAgACGg -3'
miRNA:   3'- -CGGCGGCUUG---------CAUGGUGUCCa-----UgUGC- -5'
30197 5' -54 NC_006273.1 + 204706 0.77 0.602521
Target:  5'- aGCCGCCGGcaccGCGgccgGCCGCAGGaagccgcccgGCGCGu -3'
miRNA:   3'- -CGGCGGCU----UGCa---UGGUGUCCa---------UGUGC- -5'
30197 5' -54 NC_006273.1 + 204012 0.7 0.907381
Target:  5'- uGCCGaCCucggacccagGGACGUAuCCACcucAGGUACACa -3'
miRNA:   3'- -CGGC-GG----------CUUGCAU-GGUG---UCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 202625 0.77 0.572866
Target:  5'- cGCCGCCGAcuCGcUGCCGCAGuUGCugGa -3'
miRNA:   3'- -CGGCGGCUu-GC-AUGGUGUCcAUGugC- -5'
30197 5' -54 NC_006273.1 + 202478 0.68 0.955791
Target:  5'- aGCUGCUGGugGUgACC-CAGGgucaguUGCGCGu -3'
miRNA:   3'- -CGGCGGCUugCA-UGGuGUCC------AUGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.