miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 167785 0.7 0.913234
Target:  5'- cCCGCCGcGGCGcUACCACGauGGUGCGa- -3'
miRNA:   3'- cGGCGGC-UUGC-AUGGUGU--CCAUGUgc -5'
30197 5' -54 NC_006273.1 + 74627 0.72 0.837173
Target:  5'- aGUCGCCGugcACGUACUugAGGaAgGCGg -3'
miRNA:   3'- -CGGCGGCu--UGCAUGGugUCCaUgUGC- -5'
30197 5' -54 NC_006273.1 + 121815 0.72 0.845083
Target:  5'- gGCCGCCG-ACGgg-UAguGGUGCACGu -3'
miRNA:   3'- -CGGCGGCuUGCaugGUguCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 72791 0.71 0.867691
Target:  5'- aGCCGCuCGGGCGgguagaGCCGCAGacgGCGCa -3'
miRNA:   3'- -CGGCG-GCUUGCa-----UGGUGUCca-UGUGc -5'
30197 5' -54 NC_006273.1 + 52566 0.71 0.874833
Target:  5'- cGCCGCCGu---UGCCACAGGaAC-CGg -3'
miRNA:   3'- -CGGCGGCuugcAUGGUGUCCaUGuGC- -5'
30197 5' -54 NC_006273.1 + 196686 0.71 0.874833
Target:  5'- uGCaGCCGAugGUGCUGCuGG-GCGCGu -3'
miRNA:   3'- -CGgCGGCUugCAUGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 150792 0.71 0.89501
Target:  5'- aGCCgGCCGAagcuuucgcgcACGUucACCGCgucuAGGUACugGa -3'
miRNA:   3'- -CGG-CGGCU-----------UGCA--UGGUG----UCCAUGugC- -5'
30197 5' -54 NC_006273.1 + 204012 0.7 0.907381
Target:  5'- uGCCGaCCucggacccagGGACGUAuCCACcucAGGUACACa -3'
miRNA:   3'- -CGGC-GG----------CUUGCAU-GGUG---UCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 13284 0.7 0.907381
Target:  5'- aGCCGUacUGAGCGUGCgagGCGGGUAgGCu -3'
miRNA:   3'- -CGGCG--GCUUGCAUGg--UGUCCAUgUGc -5'
30197 5' -54 NC_006273.1 + 164270 0.72 0.829087
Target:  5'- uGCCGCCGucggucgaucAgGUACuCGCAGGUguGCGCGu -3'
miRNA:   3'- -CGGCGGCu---------UgCAUG-GUGUCCA--UGUGC- -5'
30197 5' -54 NC_006273.1 + 137282 0.72 0.820831
Target:  5'- cCCGCCGAACGgACUu--GGUACGCu -3'
miRNA:   3'- cGGCGGCUUGCaUGGuguCCAUGUGc -5'
30197 5' -54 NC_006273.1 + 158769 0.73 0.812413
Target:  5'- gGCCGCCGGcCGcgGCCACGG--ACGCGu -3'
miRNA:   3'- -CGGCGGCUuGCa-UGGUGUCcaUGUGC- -5'
30197 5' -54 NC_006273.1 + 221327 0.79 0.502491
Target:  5'- gGCCGCCGAuaguuaccggagagACGUucgaGCUGCAGGUACAuCGg -3'
miRNA:   3'- -CGGCGGCU--------------UGCA----UGGUGUCCAUGU-GC- -5'
30197 5' -54 NC_006273.1 + 204706 0.77 0.602521
Target:  5'- aGCCGCCGGcaccGCGgccgGCCGCAGGaagccgcccgGCGCGu -3'
miRNA:   3'- -CGGCGGCU----UGCa---UGGUGUCCa---------UGUGC- -5'
30197 5' -54 NC_006273.1 + 186031 0.74 0.749591
Target:  5'- cGCUGCCGuuuuuUGcGCCguGCGGGUGCACGg -3'
miRNA:   3'- -CGGCGGCuu---GCaUGG--UGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 233233 0.74 0.749591
Target:  5'- cGCCGCCGucGCGUccgccccgACCACcGcGUGCGCGu -3'
miRNA:   3'- -CGGCGGCu-UGCA--------UGGUGuC-CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 37216 0.74 0.768155
Target:  5'- cGCgGCCGAcgcGCGUGCC-CAGGcagaggaagGCGCGa -3'
miRNA:   3'- -CGgCGGCU---UGCAUGGuGUCCa--------UGUGC- -5'
30197 5' -54 NC_006273.1 + 167679 0.73 0.786259
Target:  5'- gGCCGCCGuuCGUcGUCACGGGgcgGCGCGa -3'
miRNA:   3'- -CGGCGGCuuGCA-UGGUGUCCa--UGUGC- -5'
30197 5' -54 NC_006273.1 + 102837 0.73 0.795119
Target:  5'- gGCgCGCCGGccGCGU-CCACGGGcACGCu -3'
miRNA:   3'- -CG-GCGGCU--UGCAuGGUGUCCaUGUGc -5'
30197 5' -54 NC_006273.1 + 174268 0.73 0.812413
Target:  5'- aGCUGCCGAGCGaccaugaGCCGCuGGagGCAUGg -3'
miRNA:   3'- -CGGCGGCUUGCa------UGGUGuCCa-UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.