miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30197 5' -54 NC_006273.1 + 169572 0.84 0.268369
Target:  5'- cGCCGCCGAuuGCGgACCGCAGGggcgACGCa -3'
miRNA:   3'- -CGGCGGCU--UGCaUGGUGUCCa---UGUGc -5'
30197 5' -54 NC_006273.1 + 205361 0.71 0.89501
Target:  5'- gGCCGCCGGGCuggaaccuaGUGCUGCAGGagaucgAgACGg -3'
miRNA:   3'- -CGGCGGCUUG---------CAUGGUGUCCa-----UgUGC- -5'
30197 5' -54 NC_006273.1 + 31349 0.7 0.907381
Target:  5'- aGCCuGCUGugUGUACCugAGGUggAUACGu -3'
miRNA:   3'- -CGG-CGGCuuGCAUGGugUCCA--UGUGC- -5'
30197 5' -54 NC_006273.1 + 82596 0.66 0.990728
Target:  5'- -gCGCCaGAGCGUGCaaACGGGcgUGCugGg -3'
miRNA:   3'- cgGCGG-CUUGCAUGg-UGUCC--AUGugC- -5'
30197 5' -54 NC_006273.1 + 202625 0.77 0.572866
Target:  5'- cGCCGCCGAcuCGcUGCCGCAGuUGCugGa -3'
miRNA:   3'- -CGGCGGCUu-GC-AUGGUGUCcAUGugC- -5'
30197 5' -54 NC_006273.1 + 199426 0.75 0.672109
Target:  5'- aGCCGCgCGAGCGUGCgaGCGGGguuCACc -3'
miRNA:   3'- -CGGCG-GCUUGCAUGg-UGUCCau-GUGc -5'
30197 5' -54 NC_006273.1 + 46073 0.75 0.721035
Target:  5'- cCCGCCGAc---GCCGCAGGUGcCGCGg -3'
miRNA:   3'- cGGCGGCUugcaUGGUGUCCAU-GUGC- -5'
30197 5' -54 NC_006273.1 + 38340 0.74 0.749591
Target:  5'- cGCCGCCGucGCGUccgccccgACCACcGcGUGCGCGu -3'
miRNA:   3'- -CGGCGGCu-UGCA--------UGGUGuC-CAUGUGC- -5'
30197 5' -54 NC_006273.1 + 69832 0.72 0.860348
Target:  5'- cGCCGCCGAGaaaGUccCCGCGGaGUGCcCGa -3'
miRNA:   3'- -CGGCGGCUUg--CAu-GGUGUC-CAUGuGC- -5'
30197 5' -54 NC_006273.1 + 101903 0.71 0.89501
Target:  5'- gGCCGCCGccAGCGU-CCGCGccUGCACGc -3'
miRNA:   3'- -CGGCGGC--UUGCAuGGUGUccAUGUGC- -5'
30197 5' -54 NC_006273.1 + 1794 0.71 0.874833
Target:  5'- uGCaGCCGAugGUGCUGCuGG-GCGCGu -3'
miRNA:   3'- -CGgCGGCUugCAUGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 36778 0.72 0.85281
Target:  5'- aGCaCGCCGAggcccagugGCG-GCaGCAGGUGCACGc -3'
miRNA:   3'- -CG-GCGGCU---------UGCaUGgUGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 179960 0.81 0.381547
Target:  5'- uGCuCGCUGAACGUGCUGCAGGUAUuugugguGCGg -3'
miRNA:   3'- -CG-GCGGCUUGCAUGGUGUCCAUG-------UGC- -5'
30197 5' -54 NC_006273.1 + 110539 0.71 0.874833
Target:  5'- uGCCGCCGcucuuccACGgACCGCuGGcGCGCGa -3'
miRNA:   3'- -CGGCGGCu------UGCaUGGUGuCCaUGUGC- -5'
30197 5' -54 NC_006273.1 + 188552 0.8 0.441417
Target:  5'- aGCaCGCCGAAUGUuacaucgucggcGCC-CAGGUGCACGc -3'
miRNA:   3'- -CG-GCGGCUUGCA------------UGGuGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 13584 0.72 0.837173
Target:  5'- cCCGCCGGGCGgcccggGCCGCc-GUGCugGa -3'
miRNA:   3'- cGGCGGCUUGCa-----UGGUGucCAUGugC- -5'
30197 5' -54 NC_006273.1 + 177258 0.71 0.88177
Target:  5'- gGCCGCUGcGCGUGCC-CGuGGUgaauuACGCGu -3'
miRNA:   3'- -CGGCGGCuUGCAUGGuGU-CCA-----UGUGC- -5'
30197 5' -54 NC_006273.1 + 160130 0.71 0.897555
Target:  5'- gGCCGCCGcGGCGgccagcgcuucguCCAUAGGUacuugACGCGg -3'
miRNA:   3'- -CGGCGGC-UUGCau-----------GGUGUCCA-----UGUGC- -5'
30197 5' -54 NC_006273.1 + 58684 0.79 0.486623
Target:  5'- gGCUGCUauuGGgucacagccGCGUGCCGCGGGUGCGCGc -3'
miRNA:   3'- -CGGCGG---CU---------UGCAUGGUGUCCAUGUGC- -5'
30197 5' -54 NC_006273.1 + 118416 0.75 0.681989
Target:  5'- uGCUGCCGcAGCGcUGCCACu-GUGCACGu -3'
miRNA:   3'- -CGGCGGC-UUGC-AUGGUGucCAUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.