miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 198241 0.66 0.903727
Target:  5'- gGCCGaccuGUGCGUGCGACGCGAcUAUg -3'
miRNA:   3'- -UGGUcgu-CGCGCGUGCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 140505 0.66 0.903727
Target:  5'- cGCgCAGCuuuuGCGCGCGUGACaccuguuuCGGUCGCg -3'
miRNA:   3'- -UG-GUCGu---CGCGCGUGCUGc-------GCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 33472 0.66 0.903727
Target:  5'- gGCaCAGCAGCucGCGCuuGAUGCGca-GCg -3'
miRNA:   3'- -UG-GUCGUCG--CGCGugCUGCGCuagUG- -5'
30198 3' -58.3 NC_006273.1 + 37984 0.66 0.903727
Target:  5'- uGCCcguGCGGCuCGCGCGcccacaGCGCGG-CGCg -3'
miRNA:   3'- -UGGu--CGUCGcGCGUGC------UGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 18871 0.66 0.903727
Target:  5'- gACguGCuGCGCugGCACGGCGCacugggcaccAUCACa -3'
miRNA:   3'- -UGguCGuCGCG--CGUGCUGCGc---------UAGUG- -5'
30198 3' -58.3 NC_006273.1 + 100002 0.66 0.903727
Target:  5'- --aAGCAGCGCGUGC-ACGCGuagaGCg -3'
miRNA:   3'- uggUCGUCGCGCGUGcUGCGCuag-UG- -5'
30198 3' -58.3 NC_006273.1 + 151715 0.66 0.903727
Target:  5'- cGCCAGCGGaCGgaaGgGCGcCGCG-UCGCg -3'
miRNA:   3'- -UGGUCGUC-GCg--CgUGCuGCGCuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 68741 0.66 0.903727
Target:  5'- uGCCAaCGGCGCGUccACGcCGCgGGUCGa -3'
miRNA:   3'- -UGGUcGUCGCGCG--UGCuGCG-CUAGUg -5'
30198 3' -58.3 NC_006273.1 + 232877 0.66 0.903727
Target:  5'- uGCCcguGCGGCuCGCGCGcccacaGCGCGG-CGCg -3'
miRNA:   3'- -UGGu--CGUCGcGCGUGC------UGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 127401 0.66 0.903727
Target:  5'- cCCGGCAGCGCuga-GAUGCGcGUUACc -3'
miRNA:   3'- uGGUCGUCGCGcgugCUGCGC-UAGUG- -5'
30198 3' -58.3 NC_006273.1 + 173987 0.66 0.903727
Target:  5'- uCUGGUGGCGCGCGCGGCagcaaCGAgUACu -3'
miRNA:   3'- uGGUCGUCGCGCGUGCUGc----GCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 93646 0.66 0.903727
Target:  5'- cACUGGCgccGGCGCGCccugcugggACGACGCaAUgGCg -3'
miRNA:   3'- -UGGUCG---UCGCGCG---------UGCUGCGcUAgUG- -5'
30198 3' -58.3 NC_006273.1 + 232971 0.66 0.903122
Target:  5'- -gCAGCAGcCGcCGCGCGGCcucggcgGCGggCGCc -3'
miRNA:   3'- ugGUCGUC-GC-GCGUGCUG-------CGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 73379 0.66 0.903122
Target:  5'- cCCAGagucgcaaAGCGCGCgggcagccACGGCccagacuGCGGUCGCg -3'
miRNA:   3'- uGGUCg-------UCGCGCG--------UGCUG-------CGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 38078 0.66 0.903122
Target:  5'- -gCAGCAGcCGcCGCGCGGCcucggcgGCGggCGCc -3'
miRNA:   3'- ugGUCGUC-GC-GCGUGCUG-------CGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 110974 0.66 0.89758
Target:  5'- -nCAGCAcGUGuCGCcCGACGacgaGAUCGCg -3'
miRNA:   3'- ugGUCGU-CGC-GCGuGCUGCg---CUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 214927 0.66 0.89758
Target:  5'- aGCgAGCgAGUgGgGCACgguGACGUGGUCACg -3'
miRNA:   3'- -UGgUCG-UCG-CgCGUG---CUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 70102 0.66 0.89758
Target:  5'- gACaCAGCGcCGCGCugGAUGaCGGUgAUg -3'
miRNA:   3'- -UG-GUCGUcGCGCGugCUGC-GCUAgUG- -5'
30198 3' -58.3 NC_006273.1 + 45515 0.66 0.89758
Target:  5'- cCCGGCGGUcCGCcCGACGCG-UCu- -3'
miRNA:   3'- uGGUCGUCGcGCGuGCUGCGCuAGug -5'
30198 3' -58.3 NC_006273.1 + 29211 0.66 0.89758
Target:  5'- uGCCccaAGCAGCGuCGUcgucacuCGugGCG-UCACa -3'
miRNA:   3'- -UGG---UCGUCGC-GCGu------GCugCGCuAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.