miRNA display CGI


Results 1 - 20 of 285 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 56404 0.66 0.877866
Target:  5'- gACCGcGCcGUGCGCACGuucccaggcACGCGGccCACg -3'
miRNA:   3'- -UGGU-CGuCGCGCGUGC---------UGCGCUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 137893 0.66 0.877177
Target:  5'- gACCAGCAGUaugacGUGCGaugguauuacgccCGACGUGAuUUACg -3'
miRNA:   3'- -UGGUCGUCG-----CGCGU-------------GCUGCGCU-AGUG- -5'
30198 3' -58.3 NC_006273.1 + 198241 0.66 0.903727
Target:  5'- gGCCGaccuGUGCGUGCGACGCGAcUAUg -3'
miRNA:   3'- -UGGUcgu-CGCGCGUGCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 197264 0.66 0.877177
Target:  5'- gGCguGCugGGCGCGCugGcgcugggGCGCGAgucggCGCc -3'
miRNA:   3'- -UGguCG--UCGCGCGugC-------UGCGCUa----GUG- -5'
30198 3' -58.3 NC_006273.1 + 195662 0.66 0.884646
Target:  5'- aGCCAGguGCGUGUcUGcCGUGG-CACa -3'
miRNA:   3'- -UGGUCguCGCGCGuGCuGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 32777 0.66 0.877866
Target:  5'- gUCGGCGGCGCGCACcACaaaGUucUCACg -3'
miRNA:   3'- uGGUCGUCGCGCGUGcUG---CGcuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 55654 0.66 0.877866
Target:  5'- cCCAGUucuuCGCGCAgCGGCGCGuaguugCGCa -3'
miRNA:   3'- uGGUCGuc--GCGCGU-GCUGCGCua----GUG- -5'
30198 3' -58.3 NC_006273.1 + 153367 0.66 0.877866
Target:  5'- gGCCGGCGGCaCGCGCGugcccUGCG-UCGa -3'
miRNA:   3'- -UGGUCGUCGcGCGUGCu----GCGCuAGUg -5'
30198 3' -58.3 NC_006273.1 + 115407 0.66 0.884646
Target:  5'- -gCGGCGGCGCuGUACGGCaGCGGg--- -3'
miRNA:   3'- ugGUCGUCGCG-CGUGCUG-CGCUagug -5'
30198 3' -58.3 NC_006273.1 + 167428 0.66 0.891218
Target:  5'- -aCAGUGGCGgGCGCGcucuCGgCGGUCAg -3'
miRNA:   3'- ugGUCGUCGCgCGUGCu---GC-GCUAGUg -5'
30198 3' -58.3 NC_006273.1 + 77160 0.66 0.870883
Target:  5'- cGCCGGCcGaCGCGCGCc-CGCGccUCACg -3'
miRNA:   3'- -UGGUCGuC-GCGCGUGcuGCGCu-AGUG- -5'
30198 3' -58.3 NC_006273.1 + 33429 0.66 0.890571
Target:  5'- gUCGGCGGCGCGCGacagcccCGGCGCa----- -3'
miRNA:   3'- uGGUCGUCGCGCGU-------GCUGCGcuagug -5'
30198 3' -58.3 NC_006273.1 + 144755 0.66 0.870883
Target:  5'- aACguGCuGCGgagGCACGACGCGGcggccguggccUCGCu -3'
miRNA:   3'- -UGguCGuCGCg--CGUGCUGCGCU-----------AGUG- -5'
30198 3' -58.3 NC_006273.1 + 77022 0.66 0.884646
Target:  5'- -gCGGC-GUGCGCACGccGCGCGAacgaCGCu -3'
miRNA:   3'- ugGUCGuCGCGCGUGC--UGCGCUa---GUG- -5'
30198 3' -58.3 NC_006273.1 + 148782 0.66 0.870883
Target:  5'- gGCCGGCGGCgGCGC-CG-UGCGucUCAa -3'
miRNA:   3'- -UGGUCGUCG-CGCGuGCuGCGCu-AGUg -5'
30198 3' -58.3 NC_006273.1 + 76619 0.66 0.890571
Target:  5'- gGCCugAGCGGCgucgacgGCGCACuGGCGCGAc--- -3'
miRNA:   3'- -UGG--UCGUCG-------CGCGUG-CUGCGCUagug -5'
30198 3' -58.3 NC_006273.1 + 233350 0.66 0.877866
Target:  5'- uCCuGCcauCGCGCACGGCGCGucccCGCc -3'
miRNA:   3'- uGGuCGuc-GCGCGUGCUGCGCua--GUG- -5'
30198 3' -58.3 NC_006273.1 + 23365 0.66 0.875792
Target:  5'- gUCAGCGGCuGCGCAuucgccugccgcauCGAUaccaGCGGUUACg -3'
miRNA:   3'- uGGUCGUCG-CGCGU--------------GCUG----CGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 152961 0.66 0.884646
Target:  5'- -gCAGCugcuuGCGCaGCACGcACG-GGUCGCg -3'
miRNA:   3'- ugGUCGu----CGCG-CGUGC-UGCgCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 30488 0.66 0.883977
Target:  5'- cACgAGCAcGCGgGCGCGcaGCGCcacggaagaucugGAUCGCa -3'
miRNA:   3'- -UGgUCGU-CGCgCGUGC--UGCG-------------CUAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.