miRNA display CGI


Results 21 - 40 of 285 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 144755 0.66 0.870883
Target:  5'- aACguGCuGCGgagGCACGACGCGGcggccguggccUCGCu -3'
miRNA:   3'- -UGguCGuCGCg--CGUGCUGCGCU-----------AGUG- -5'
30198 3' -58.3 NC_006273.1 + 23365 0.66 0.875792
Target:  5'- gUCAGCGGCuGCGCAuucgccugccgcauCGAUaccaGCGGUUACg -3'
miRNA:   3'- uGGUCGUCG-CGCGU--------------GCUG----CGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 152961 0.66 0.884646
Target:  5'- -gCAGCugcuuGCGCaGCACGcACG-GGUCGCg -3'
miRNA:   3'- ugGUCGu----CGCG-CGUGC-UGCgCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 68741 0.66 0.903727
Target:  5'- uGCCAaCGGCGCGUccACGcCGCgGGUCGa -3'
miRNA:   3'- -UGGUcGUCGCGCG--UGCuGCG-CUAGUg -5'
30198 3' -58.3 NC_006273.1 + 173987 0.66 0.903727
Target:  5'- uCUGGUGGCGCGCGCGGCagcaaCGAgUACu -3'
miRNA:   3'- uGGUCGUCGCGCGUGCUGc----GCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 111334 0.66 0.89758
Target:  5'- gGCCGcauagcGCGGcCGCGCcgcuggguucaGCGGCGUGAUC-Ca -3'
miRNA:   3'- -UGGU------CGUC-GCGCG-----------UGCUGCGCUAGuG- -5'
30198 3' -58.3 NC_006273.1 + 198241 0.66 0.903727
Target:  5'- gGCCGaccuGUGCGUGCGACGCGAcUAUg -3'
miRNA:   3'- -UGGUcgu-CGCGCGUGCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 151715 0.66 0.903727
Target:  5'- cGCCAGCGGaCGgaaGgGCGcCGCG-UCGCg -3'
miRNA:   3'- -UGGUCGUC-GCg--CgUGCuGCGCuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 232971 0.66 0.903122
Target:  5'- -gCAGCAGcCGcCGCGCGGCcucggcgGCGggCGCc -3'
miRNA:   3'- ugGUCGUC-GC-GCGUGCUG-------CGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 137893 0.66 0.877177
Target:  5'- gACCAGCAGUaugacGUGCGaugguauuacgccCGACGUGAuUUACg -3'
miRNA:   3'- -UGGUCGUCG-----CGCGU-------------GCUGCGCU-AGUG- -5'
30198 3' -58.3 NC_006273.1 + 113508 0.66 0.891218
Target:  5'- aGCCGGCGGCGgGUugcccgggggGCG-CGCGggCGg -3'
miRNA:   3'- -UGGUCGUCGCgCG----------UGCuGCGCuaGUg -5'
30198 3' -58.3 NC_006273.1 + 232877 0.66 0.903727
Target:  5'- uGCCcguGCGGCuCGCGCGcccacaGCGCGG-CGCg -3'
miRNA:   3'- -UGGu--CGUCGcGCGUGC------UGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 197264 0.66 0.877177
Target:  5'- gGCguGCugGGCGCGCugGcgcugggGCGCGAgucggCGCc -3'
miRNA:   3'- -UGguCG--UCGCGCGugC-------UGCGCUa----GUG- -5'
30198 3' -58.3 NC_006273.1 + 73379 0.66 0.903122
Target:  5'- cCCAGagucgcaaAGCGCGCgggcagccACGGCccagacuGCGGUCGCg -3'
miRNA:   3'- uGGUCg-------UCGCGCG--------UGCUG-------CGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 195662 0.66 0.884646
Target:  5'- aGCCAGguGCGUGUcUGcCGUGG-CACa -3'
miRNA:   3'- -UGGUCguCGCGCGuGCuGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 127401 0.66 0.903727
Target:  5'- cCCGGCAGCGCuga-GAUGCGcGUUACc -3'
miRNA:   3'- uGGUCGUCGCGcgugCUGCGC-UAGUG- -5'
30198 3' -58.3 NC_006273.1 + 115912 0.66 0.89758
Target:  5'- gGCCGGUguGGCGCuGCACaaaGCGCG-UCAg -3'
miRNA:   3'- -UGGUCG--UCGCG-CGUGc--UGCGCuAGUg -5'
30198 3' -58.3 NC_006273.1 + 140505 0.66 0.903727
Target:  5'- cGCgCAGCuuuuGCGCGCGUGACaccuguuuCGGUCGCg -3'
miRNA:   3'- -UG-GUCGu---CGCGCGUGCUGc-------GCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 167428 0.66 0.891218
Target:  5'- -aCAGUGGCGgGCGCGcucuCGgCGGUCAg -3'
miRNA:   3'- ugGUCGUCGCgCGUGCu---GC-GCUAGUg -5'
30198 3' -58.3 NC_006273.1 + 2371 0.66 0.877177
Target:  5'- gGCguGCugGGCGCGCugGcgcugggGCGCGAgucggCGCc -3'
miRNA:   3'- -UGguCG--UCGCGCGugC-------UGCGCUa----GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.