miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 191155 1.09 0.002516
Target:  5'- cACCAGCAGCGCGCACGACGCGAUCACg -3'
miRNA:   3'- -UGGUCGUCGCGCGUGCUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 125635 0.79 0.239872
Target:  5'- uCCAGUAGCGgGC--GACGCGAUCACu -3'
miRNA:   3'- uGGUCGUCGCgCGugCUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 234972 0.76 0.358732
Target:  5'- gACguGCGGCGCGCACGGCGaaaagcaGAcgCGCg -3'
miRNA:   3'- -UGguCGUCGCGCGUGCUGCg------CUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 141 0.76 0.358732
Target:  5'- gACguGCGGCGCGCACGGCGaaaagcaGAcgCGCg -3'
miRNA:   3'- -UGguCGUCGCGCGUGCUGCg------CUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 40079 0.76 0.358732
Target:  5'- gACguGCGGCGCGCACGGCGaaaagcaGAcgCGCg -3'
miRNA:   3'- -UGguCGUCGCGCGUGCUGCg------CUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 189908 0.76 0.374231
Target:  5'- aACCAGCugguugaagAGCGCGCACacGCGCGA-CACa -3'
miRNA:   3'- -UGGUCG---------UCGCGCGUGc-UGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 103514 0.76 0.382148
Target:  5'- cGCCAGguGCGUGCcguCGAUGCGGcCGCc -3'
miRNA:   3'- -UGGUCguCGCGCGu--GCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 92619 0.75 0.398314
Target:  5'- cGCCAGCGGCGCGCGUG-CG-GAUCAg -3'
miRNA:   3'- -UGGUCGUCGCGCGUGCuGCgCUAGUg -5'
30198 3' -58.3 NC_006273.1 + 113615 0.75 0.414912
Target:  5'- gGCCguGGUA-CGCGCGCGAcccCGCGGUCACg -3'
miRNA:   3'- -UGG--UCGUcGCGCGUGCU---GCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 63823 0.75 0.414912
Target:  5'- cACCGGCAGCG-GCACGcCGCGAg--- -3'
miRNA:   3'- -UGGUCGUCGCgCGUGCuGCGCUagug -5'
30198 3' -58.3 NC_006273.1 + 141317 0.75 0.431928
Target:  5'- uACCGGC-GCauGCGCACGACGCGcAUC-Ca -3'
miRNA:   3'- -UGGUCGuCG--CGCGUGCUGCGC-UAGuG- -5'
30198 3' -58.3 NC_006273.1 + 165047 0.75 0.43538
Target:  5'- gGCgCGGCAGCGgugcucacgggcagaCGCACGGCGCGGUUg- -3'
miRNA:   3'- -UG-GUCGUCGC---------------GCGUGCUGCGCUAGug -5'
30198 3' -58.3 NC_006273.1 + 2028 0.74 0.440587
Target:  5'- cGCCGGCGGgGaCGCGCcguGCGCGAUgGCa -3'
miRNA:   3'- -UGGUCGUCgC-GCGUGc--UGCGCUAgUG- -5'
30198 3' -58.3 NC_006273.1 + 146330 0.74 0.440587
Target:  5'- cGCgGGUAGCGUGUuuuuuCGcCGCGAUCACg -3'
miRNA:   3'- -UGgUCGUCGCGCGu----GCuGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 159815 0.74 0.440587
Target:  5'- gGCCAGCGGCGCGCACaGuCGC---CGCa -3'
miRNA:   3'- -UGGUCGUCGCGCGUG-CuGCGcuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 196921 0.74 0.440587
Target:  5'- cGCCGGCGGgGaCGCGCcguGCGCGAUgGCa -3'
miRNA:   3'- -UGGUCGUCgC-GCGUGc--UGCGCUAgUG- -5'
30198 3' -58.3 NC_006273.1 + 148920 0.74 0.449344
Target:  5'- cACCGGCGGUGCGCacccgccgagcgACGACGCuacuuUCACc -3'
miRNA:   3'- -UGGUCGUCGCGCG------------UGCUGCGcu---AGUG- -5'
30198 3' -58.3 NC_006273.1 + 62131 0.74 0.449344
Target:  5'- gGCCAGCAGC-CGCugGucCGCcggguGAUCACg -3'
miRNA:   3'- -UGGUCGUCGcGCGugCu-GCG-----CUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 133474 0.74 0.467142
Target:  5'- -aCGGCGGCGUGCA-GGCGCGGaCGCu -3'
miRNA:   3'- ugGUCGUCGCGCGUgCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 141740 0.74 0.476176
Target:  5'- cCCAGCAGgGCGCGcCGGCGCcagugGAUgCGCg -3'
miRNA:   3'- uGGUCGUCgCGCGU-GCUGCG-----CUA-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.