Results 21 - 40 of 285 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30198 | 3' | -58.3 | NC_006273.1 | + | 178973 | 0.74 | 0.476176 |
Target: 5'- gGCC-GCGugccugggaacGUGCGCACGGCGCGGUCccGCg -3' miRNA: 3'- -UGGuCGU-----------CGCGCGUGCUGCGCUAG--UG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 25501 | 0.74 | 0.485295 |
Target: 5'- uGCUAcGCGGCGCcCGCGACGUGGuuUCACc -3' miRNA: 3'- -UGGU-CGUCGCGcGUGCUGCGCU--AGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 187946 | 0.74 | 0.485295 |
Target: 5'- -gCAGCAGCGCGUucgACGACGuCGuacgaGUCGCg -3' miRNA: 3'- ugGUCGUCGCGCG---UGCUGC-GC-----UAGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 72220 | 0.74 | 0.485295 |
Target: 5'- cACCAGCgAGCGCGCAUccaGAUGgCGcUCGCa -3' miRNA: 3'- -UGGUCG-UCGCGCGUG---CUGC-GCuAGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 6377 | 0.73 | 0.494497 |
Target: 5'- cCCAaCGGcCGCGCAaGGCGUGAUCACg -3' miRNA: 3'- uGGUcGUC-GCGCGUgCUGCGCUAGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 20353 | 0.73 | 0.494497 |
Target: 5'- cCCGGCAGCGCcCACacugcucaGACGaCGGUCGCu -3' miRNA: 3'- uGGUCGUCGCGcGUG--------CUGC-GCUAGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 70761 | 0.73 | 0.503779 |
Target: 5'- cGCCcgAGCAG-GUGCGCGugGUGAUCGu -3' miRNA: 3'- -UGG--UCGUCgCGCGUGCugCGCUAGUg -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 37197 | 0.73 | 0.522561 |
Target: 5'- uACCaAGCAGCGUuuGCGACGCGGccgacgCGCg -3' miRNA: 3'- -UGG-UCGUCGCGcgUGCUGCGCUa-----GUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 87492 | 0.73 | 0.532053 |
Target: 5'- gGCCAgcGCAGCGUaGCugG-CGCGAUgCACa -3' miRNA: 3'- -UGGU--CGUCGCG-CGugCuGCGCUA-GUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 163033 | 0.73 | 0.532053 |
Target: 5'- cCCAGCAGCGCcCACaGCGCGggCGa -3' miRNA: 3'- uGGUCGUCGCGcGUGcUGCGCuaGUg -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 194816 | 0.73 | 0.541606 |
Target: 5'- cACCGGCAGCGCGCagaaaGCGcCGUGGaCAg -3' miRNA: 3'- -UGGUCGUCGCGCG-----UGCuGCGCUaGUg -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 234754 | 0.73 | 0.541606 |
Target: 5'- cACCGGCAGCGCGCagaaaGCGcCGUGGaCAg -3' miRNA: 3'- -UGGUCGUCGCGCG-----UGCuGCGCUaGUg -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 142065 | 0.72 | 0.551217 |
Target: 5'- -gCGGCAGCGcCGCcaGCGGCGaCGGUUACc -3' miRNA: 3'- ugGUCGUCGC-GCG--UGCUGC-GCUAGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 153593 | 0.72 | 0.551217 |
Target: 5'- -gCGGCGGCGUGaccgGCGGUGCGGUCGCg -3' miRNA: 3'- ugGUCGUCGCGCg---UGCUGCGCUAGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 197974 | 0.72 | 0.560878 |
Target: 5'- -gUAGCGGCGCGCccCGGCGCucaGUCGCg -3' miRNA: 3'- ugGUCGUCGCGCGu-GCUGCGc--UAGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 92316 | 0.72 | 0.567669 |
Target: 5'- cGCaCAGCgcGGCGCGCACGAucucgcugggguugUGCGGguUCACg -3' miRNA: 3'- -UG-GUCG--UCGCGCGUGCU--------------GCGCU--AGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 84723 | 0.72 | 0.570586 |
Target: 5'- uCCAGCAGCGaugagGCGCGuCGUGGUCu- -3' miRNA: 3'- uGGUCGUCGCg----CGUGCuGCGCUAGug -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 1259 | 0.72 | 0.580333 |
Target: 5'- cGCaAGUGGuCGCaGCGCGACGCGggCACg -3' miRNA: 3'- -UGgUCGUC-GCG-CGUGCUGCGCuaGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 196152 | 0.72 | 0.580333 |
Target: 5'- cGCaAGUGGuCGCaGCGCGACGCGggCACg -3' miRNA: 3'- -UGgUCGUC-GCG-CGUGCUGCGCuaGUG- -5' |
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30198 | 3' | -58.3 | NC_006273.1 | + | 156069 | 0.72 | 0.594037 |
Target: 5'- cGCCAGCAuuacgcgcaucggucGCgacaugcuagaGCGCACGGCGCGGuUCAUc -3' miRNA: 3'- -UGGUCGU---------------CG-----------CGCGUGCUGCGCU-AGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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