miRNA display CGI


Results 21 - 40 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 111334 0.66 0.89758
Target:  5'- gGCCGcauagcGCGGcCGCGCcgcuggguucaGCGGCGUGAUC-Ca -3'
miRNA:   3'- -UGGU------CGUC-GCGCG-----------UGCUGCGCUAGuG- -5'
30198 3' -58.3 NC_006273.1 + 33803 0.66 0.89758
Target:  5'- gGCCAGguacaUGGCGUaGcCGCGACGCGGguuggCACa -3'
miRNA:   3'- -UGGUC-----GUCGCG-C-GUGCUGCGCUa----GUG- -5'
30198 3' -58.3 NC_006273.1 + 45515 0.66 0.89758
Target:  5'- cCCGGCGGUcCGCcCGACGCG-UCu- -3'
miRNA:   3'- uGGUCGUCGcGCGuGCUGCGCuAGug -5'
30198 3' -58.3 NC_006273.1 + 166644 0.66 0.89758
Target:  5'- gACCcGCGGCGUggacGCGcCGugGCaGUCGCc -3'
miRNA:   3'- -UGGuCGUCGCG----CGU-GCugCGcUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 158000 0.66 0.89758
Target:  5'- --aGGCGGUGgGCAgGAUGCGGUUg- -3'
miRNA:   3'- uggUCGUCGCgCGUgCUGCGCUAGug -5'
30198 3' -58.3 NC_006273.1 + 110974 0.66 0.89758
Target:  5'- -nCAGCAcGUGuCGCcCGACGacgaGAUCGCg -3'
miRNA:   3'- ugGUCGU-CGC-GCGuGCUGCg---CUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 29211 0.66 0.89758
Target:  5'- uGCCccaAGCAGCGuCGUcgucacuCGugGCG-UCACa -3'
miRNA:   3'- -UGG---UCGUCGC-GCGu------GCugCGCuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 61157 0.66 0.89758
Target:  5'- --aGGUAGcCGCGCAUGACGCaGGUgaGCa -3'
miRNA:   3'- uggUCGUC-GCGCGUGCUGCG-CUAg-UG- -5'
30198 3' -58.3 NC_006273.1 + 88032 0.66 0.896953
Target:  5'- cCCGGCGGCGUccguuaaucGCugGGCGuCGGcguccagcacgcgUCGCa -3'
miRNA:   3'- uGGUCGUCGCG---------CGugCUGC-GCU-------------AGUG- -5'
30198 3' -58.3 NC_006273.1 + 233524 0.66 0.891218
Target:  5'- aGCCuguucGCGGCaGCGUACGACGUuccaGUCAg -3'
miRNA:   3'- -UGGu----CGUCG-CGCGUGCUGCGc---UAGUg -5'
30198 3' -58.3 NC_006273.1 + 199452 0.66 0.891218
Target:  5'- cACCuGCAGCGC-UACGuGCGCGc-CACg -3'
miRNA:   3'- -UGGuCGUCGCGcGUGC-UGCGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 206823 0.66 0.891218
Target:  5'- gGCCGGCuGCaUGCACauccACGCGuUCGCg -3'
miRNA:   3'- -UGGUCGuCGcGCGUGc---UGCGCuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 167428 0.66 0.891218
Target:  5'- -aCAGUGGCGgGCGCGcucuCGgCGGUCAg -3'
miRNA:   3'- ugGUCGUCGCgCGUGCu---GC-GCUAGUg -5'
30198 3' -58.3 NC_006273.1 + 178665 0.66 0.891218
Target:  5'- -gCGGUGGCGgcaagaaGCACGAcCGCGGUgGCg -3'
miRNA:   3'- ugGUCGUCGCg------CGUGCU-GCGCUAgUG- -5'
30198 3' -58.3 NC_006273.1 + 145781 0.66 0.891218
Target:  5'- uACCuuUAGCGCGCACGGCaaaaGCGAc--- -3'
miRNA:   3'- -UGGucGUCGCGCGUGCUG----CGCUagug -5'
30198 3' -58.3 NC_006273.1 + 188979 0.66 0.891218
Target:  5'- gUgGGCGGCGUGCucagguucuuacGCGGCGCGggUAUc -3'
miRNA:   3'- uGgUCGUCGCGCG------------UGCUGCGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 49552 0.66 0.891218
Target:  5'- cGCUGGUAGuCGCGCAUagugugGAaGUGGUCGCa -3'
miRNA:   3'- -UGGUCGUC-GCGCGUG------CUgCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 113508 0.66 0.891218
Target:  5'- aGCCGGCGGCGgGUugcccgggggGCG-CGCGggCGg -3'
miRNA:   3'- -UGGUCGUCGCgCG----------UGCuGCGCuaGUg -5'
30198 3' -58.3 NC_006273.1 + 76619 0.66 0.890571
Target:  5'- gGCCugAGCGGCgucgacgGCGCACuGGCGCGAc--- -3'
miRNA:   3'- -UGG--UCGUCG-------CGCGUG-CUGCGCUagug -5'
30198 3' -58.3 NC_006273.1 + 33429 0.66 0.890571
Target:  5'- gUCGGCGGCGCGCGacagcccCGGCGCa----- -3'
miRNA:   3'- uGGUCGUCGCGCGU-------GCUGCGcuagug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.