miRNA display CGI


Results 41 - 60 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 770 0.66 0.884646
Target:  5'- aGCCAGguGCGUGUcUGcCGUGG-CACa -3'
miRNA:   3'- -UGGUCguCGCGCGuGCuGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 105679 0.66 0.884646
Target:  5'- aGCCGcaaaaaCAGCGCGCAcccguuCGACGUuaacgGGUCGCg -3'
miRNA:   3'- -UGGUc-----GUCGCGCGU------GCUGCG-----CUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 195662 0.66 0.884646
Target:  5'- aGCCAGguGCGUGUcUGcCGUGG-CACa -3'
miRNA:   3'- -UGGUCguCGCGCGuGCuGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 77022 0.66 0.884646
Target:  5'- -gCGGC-GUGCGCACGccGCGCGAacgaCGCu -3'
miRNA:   3'- ugGUCGuCGCGCGUGC--UGCGCUa---GUG- -5'
30198 3' -58.3 NC_006273.1 + 86261 0.66 0.884646
Target:  5'- uGCCAGaaGGCGCGuCGCGA-GCGAaaaCGCa -3'
miRNA:   3'- -UGGUCg-UCGCGC-GUGCUgCGCUa--GUG- -5'
30198 3' -58.3 NC_006273.1 + 141431 0.66 0.884646
Target:  5'- uACCGGC-GCauGCGCAgGGCGCGccuccCGCg -3'
miRNA:   3'- -UGGUCGuCG--CGCGUgCUGCGCua---GUG- -5'
30198 3' -58.3 NC_006273.1 + 80393 0.66 0.884646
Target:  5'- gGCCguGGCGGCG-GCAgCGGCGCaGAgcgaacUCACg -3'
miRNA:   3'- -UGG--UCGUCGCgCGU-GCUGCG-CU------AGUG- -5'
30198 3' -58.3 NC_006273.1 + 152961 0.66 0.884646
Target:  5'- -gCAGCugcuuGCGCaGCACGcACG-GGUCGCg -3'
miRNA:   3'- ugGUCGu----CGCG-CGUGC-UGCgCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 115407 0.66 0.884646
Target:  5'- -gCGGCGGCGCuGUACGGCaGCGGg--- -3'
miRNA:   3'- ugGUCGUCGCG-CGUGCUG-CGCUagug -5'
30198 3' -58.3 NC_006273.1 + 30488 0.66 0.883977
Target:  5'- cACgAGCAcGCGgGCGCGcaGCGCcacggaagaucugGAUCGCa -3'
miRNA:   3'- -UGgUCGU-CGCgCGUGC--UGCG-------------CUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 196998 0.66 0.877866
Target:  5'- -gCGGCGGCGaCGgACGGCgGCGGUaacaGCa -3'
miRNA:   3'- ugGUCGUCGC-GCgUGCUG-CGCUAg---UG- -5'
30198 3' -58.3 NC_006273.1 + 233350 0.66 0.877866
Target:  5'- uCCuGCcauCGCGCACGGCGCGucccCGCc -3'
miRNA:   3'- uGGuCGuc-GCGCGUGCUGCGCua--GUG- -5'
30198 3' -58.3 NC_006273.1 + 56404 0.66 0.877866
Target:  5'- gACCGcGCcGUGCGCACGuucccaggcACGCGGccCACg -3'
miRNA:   3'- -UGGU-CGuCGCGCGUGC---------UGCGCUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 188610 0.66 0.877866
Target:  5'- cGCCGGUuuGCGCGCGCGGCagaGUCGg -3'
miRNA:   3'- -UGGUCGu-CGCGCGUGCUGcgcUAGUg -5'
30198 3' -58.3 NC_006273.1 + 233058 0.66 0.877866
Target:  5'- --aAGCAGCGUggcgGCGaaaGACGCGAUCc- -3'
miRNA:   3'- uggUCGUCGCG----CGUg--CUGCGCUAGug -5'
30198 3' -58.3 NC_006273.1 + 68450 0.66 0.877866
Target:  5'- gGCCAGCAGCucaucaCGCagACGAUGCcg-CACa -3'
miRNA:   3'- -UGGUCGUCGc-----GCG--UGCUGCGcuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 73652 0.66 0.877866
Target:  5'- uCCAugacGCGGCgGCGCAaaGCGCGAgCGCa -3'
miRNA:   3'- uGGU----CGUCG-CGCGUgcUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 144433 0.66 0.877866
Target:  5'- gACCAcGguGCGacuGCACGGCgGCGAggcggugCGCg -3'
miRNA:   3'- -UGGU-CguCGCg--CGUGCUG-CGCUa------GUG- -5'
30198 3' -58.3 NC_006273.1 + 42717 0.66 0.877866
Target:  5'- aGCCGGCcaGGcCGCGCcacACGGCGaCGAgcCGCa -3'
miRNA:   3'- -UGGUCG--UC-GCGCG---UGCUGC-GCUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 38457 0.66 0.877866
Target:  5'- uCCuGCcauCGCGCACGGCGCGucccCGCc -3'
miRNA:   3'- uGGuCGuc-GCGCGUGCUGCGCua--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.