miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 141 0.76 0.358732
Target:  5'- gACguGCGGCGCGCACGGCGaaaagcaGAcgCGCg -3'
miRNA:   3'- -UGguCGUCGCGCGUGCUGCg------CUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 770 0.66 0.884646
Target:  5'- aGCCAGguGCGUGUcUGcCGUGG-CACa -3'
miRNA:   3'- -UGGUCguCGCGCGuGCuGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 807 0.68 0.808334
Target:  5'- aGCCGuCcGCGUGUguaaACGGCGUGGUCGCu -3'
miRNA:   3'- -UGGUcGuCGCGCG----UGCUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 1259 0.72 0.580333
Target:  5'- cGCaAGUGGuCGCaGCGCGACGCGggCACg -3'
miRNA:   3'- -UGgUCGUC-GCG-CGUGCUGCGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 1567 0.69 0.717372
Target:  5'- cCUAGCGGCGCGC--GACGCGGaCGa -3'
miRNA:   3'- uGGUCGUCGCGCGugCUGCGCUaGUg -5'
30198 3' -58.3 NC_006273.1 + 1742 0.68 0.782243
Target:  5'- cGCCGGCGGUGggccgGCACGACgGUGG-CACu -3'
miRNA:   3'- -UGGUCGUCGCg----CGUGCUG-CGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 1901 0.69 0.730701
Target:  5'- aACCAGCgucugugcugcggcuGGCugGCGCugGGCGCGGUgcugccCGCg -3'
miRNA:   3'- -UGGUCG---------------UCG--CGCGugCUGCGCUA------GUG- -5'
30198 3' -58.3 NC_006273.1 + 2028 0.74 0.440587
Target:  5'- cGCCGGCGGgGaCGCGCcguGCGCGAUgGCa -3'
miRNA:   3'- -UGGUCGUCgC-GCGUGc--UGCGCUAgUG- -5'
30198 3' -58.3 NC_006273.1 + 2129 0.67 0.833092
Target:  5'- uGCCAaacGCGGaCGCGCACG-CgGUGGUCGg -3'
miRNA:   3'- -UGGU---CGUC-GCGCGUGCuG-CGCUAGUg -5'
30198 3' -58.3 NC_006273.1 + 2204 0.69 0.726908
Target:  5'- gACCcGCacauGGCGCuggGCACGACGCGGUgaACg -3'
miRNA:   3'- -UGGuCG----UCGCG---CGUGCUGCGCUAg-UG- -5'
30198 3' -58.3 NC_006273.1 + 2371 0.66 0.877177
Target:  5'- gGCguGCugGGCGCGCugGcgcugggGCGCGAgucggCGCc -3'
miRNA:   3'- -UGguCG--UCGCGCGugC-------UGCGCUa----GUG- -5'
30198 3' -58.3 NC_006273.1 + 2488 0.67 0.8637
Target:  5'- cACCuGCAcccGCGCGcCGCGcugugggcGCGCGAgccgCACg -3'
miRNA:   3'- -UGGuCGU---CGCGC-GUGC--------UGCGCUa---GUG- -5'
30198 3' -58.3 NC_006273.1 + 3179 0.68 0.816744
Target:  5'- uGCCAGauuGUGcCGCgacauGCGACGCG-UCACg -3'
miRNA:   3'- -UGGUCgu-CGC-GCG-----UGCUGCGCuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 6377 0.73 0.494497
Target:  5'- cCCAaCGGcCGCGCAaGGCGUGAUCACg -3'
miRNA:   3'- uGGUcGUC-GCGCGUgCUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 12405 0.66 0.89758
Target:  5'- gGCgAGCAGaUGCGCACGccgcugcuaaccACGCaaccgGAUCAUa -3'
miRNA:   3'- -UGgUCGUC-GCGCGUGC------------UGCG-----CUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 13967 0.67 0.848761
Target:  5'- uCCA-CAGCGCGUugGACGgGGcgUCGg -3'
miRNA:   3'- uGGUcGUCGCGCGugCUGCgCU--AGUg -5'
30198 3' -58.3 NC_006273.1 + 16033 0.67 0.856324
Target:  5'- uGCCAGUAcaGCGC-CGACGUGcuUCGCg -3'
miRNA:   3'- -UGGUCGUcgCGCGuGCUGCGCu-AGUG- -5'
30198 3' -58.3 NC_006273.1 + 18871 0.66 0.903727
Target:  5'- gACguGCuGCGCugGCACGGCGCacugggcaccAUCACa -3'
miRNA:   3'- -UGguCGuCGCG--CGUGCUGCGc---------UAGUG- -5'
30198 3' -58.3 NC_006273.1 + 20131 0.69 0.755028
Target:  5'- aGCCGGCAGagGaUGCACGAgaCGCGGaCGCa -3'
miRNA:   3'- -UGGUCGUCg-C-GCGUGCU--GCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 20353 0.73 0.494497
Target:  5'- cCCGGCAGCGCcCACacugcucaGACGaCGGUCGCu -3'
miRNA:   3'- uGGUCGUCGCGcGUG--------CUGC-GCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.