miRNA display CGI


Results 21 - 40 of 285 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 20600 0.69 0.736368
Target:  5'- cCCGGCGGCcgaaGCGCAaGAacugGCGAUCAUa -3'
miRNA:   3'- uGGUCGUCG----CGCGUgCUg---CGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 21531 0.69 0.764212
Target:  5'- cGCCGGCgGGCGCugGCguuucgaggacgGCGGCGCGG-CGCa -3'
miRNA:   3'- -UGGUCG-UCGCG--CG------------UGCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 21931 0.7 0.707768
Target:  5'- cGCCGGCAucggguagacgGCGCuaGCGGCGCuAUCAUc -3'
miRNA:   3'- -UGGUCGU-----------CGCGcgUGCUGCGcUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 23365 0.66 0.875792
Target:  5'- gUCAGCGGCuGCGCAuucgccugccgcauCGAUaccaGCGGUUACg -3'
miRNA:   3'- uGGUCGUCG-CGCGU--------------GCUG----CGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 24280 0.67 0.833092
Target:  5'- uACCGGUcacagAGCGUGC-UGACGUGGaCGCa -3'
miRNA:   3'- -UGGUCG-----UCGCGCGuGCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 25501 0.74 0.485295
Target:  5'- uGCUAcGCGGCGCcCGCGACGUGGuuUCACc -3'
miRNA:   3'- -UGGU-CGUCGCGcGUGCUGCGCU--AGUG- -5'
30198 3' -58.3 NC_006273.1 + 28266 0.71 0.649176
Target:  5'- uGCCguuuucguGGCAGCGUGuCAUGcCGCGAgUCACa -3'
miRNA:   3'- -UGG--------UCGUCGCGC-GUGCuGCGCU-AGUG- -5'
30198 3' -58.3 NC_006273.1 + 29211 0.66 0.89758
Target:  5'- uGCCccaAGCAGCGuCGUcgucacuCGugGCG-UCACa -3'
miRNA:   3'- -UGG---UCGUCGC-GCGu------GCugCGCuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 29765 0.68 0.808334
Target:  5'- cUCGaCGGCGCGCAgccCGACGCGcgCAa -3'
miRNA:   3'- uGGUcGUCGCGCGU---GCUGCGCuaGUg -5'
30198 3' -58.3 NC_006273.1 + 30488 0.66 0.883977
Target:  5'- cACgAGCAcGCGgGCGCGcaGCGCcacggaagaucugGAUCGCa -3'
miRNA:   3'- -UGgUCGU-CGCgCGUGC--UGCG-------------CUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 31660 0.68 0.785792
Target:  5'- gGCCAGCugcgucgucaaggacGGCGUGUugGACGCuguGUgGCg -3'
miRNA:   3'- -UGGUCG---------------UCGCGCGugCUGCGc--UAgUG- -5'
30198 3' -58.3 NC_006273.1 + 32608 0.67 0.8637
Target:  5'- gACgCAGCAGCGCGCggcucacguaGCaGGC-CGAcUCACg -3'
miRNA:   3'- -UG-GUCGUCGCGCG----------UG-CUGcGCU-AGUG- -5'
30198 3' -58.3 NC_006273.1 + 32777 0.66 0.877866
Target:  5'- gUCGGCGGCGCGCACcACaaaGUucUCACg -3'
miRNA:   3'- uGGUCGUCGCGCGUGcUG---CGcuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 33287 0.7 0.678632
Target:  5'- -gCGGCGGCaGCGguUGGCGUGGUUGCu -3'
miRNA:   3'- ugGUCGUCG-CGCguGCUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 33346 0.68 0.781353
Target:  5'- -gCGGCAGcCGCGUgcgauccuGCGGCGCGuccccguGUCGCa -3'
miRNA:   3'- ugGUCGUC-GCGCG--------UGCUGCGC-------UAGUG- -5'
30198 3' -58.3 NC_006273.1 + 33393 0.67 0.824999
Target:  5'- uGCCAG-AGUagGCGCugGACGCGcacCGCc -3'
miRNA:   3'- -UGGUCgUCG--CGCGugCUGCGCua-GUG- -5'
30198 3' -58.3 NC_006273.1 + 33429 0.66 0.890571
Target:  5'- gUCGGCGGCGCGCGacagcccCGGCGCa----- -3'
miRNA:   3'- uGGUCGUCGCGCGU-------GCUGCGcuagug -5'
30198 3' -58.3 NC_006273.1 + 33472 0.66 0.903727
Target:  5'- gGCaCAGCAGCucGCGCuuGAUGCGca-GCg -3'
miRNA:   3'- -UG-GUCGUCG--CGCGugCUGCGCuagUG- -5'
30198 3' -58.3 NC_006273.1 + 33803 0.66 0.89758
Target:  5'- gGCCAGguacaUGGCGUaGcCGCGACGCGGguuggCACa -3'
miRNA:   3'- -UGGUC-----GUCGCG-C-GUGCUGCGCUa----GUG- -5'
30198 3' -58.3 NC_006273.1 + 34716 0.69 0.742941
Target:  5'- cGCCGGCGGCcgccagauccucggGCGUGCGACacaacaggccgGCGcgCACa -3'
miRNA:   3'- -UGGUCGUCG--------------CGCGUGCUG-----------CGCuaGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.