miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 234972 0.76 0.358732
Target:  5'- gACguGCGGCGCGCACGGCGaaaagcaGAcgCGCg -3'
miRNA:   3'- -UGguCGUCGCGCGUGCUGCg------CUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 234754 0.73 0.541606
Target:  5'- cACCGGCAGCGCGCagaaaGCGcCGUGGaCAg -3'
miRNA:   3'- -UGGUCGUCGCGCG-----UGCuGCGCUaGUg -5'
30198 3' -58.3 NC_006273.1 + 234613 0.69 0.736368
Target:  5'- -aCGGCAGUGCGCACaaaGCGcCGGaCACa -3'
miRNA:   3'- ugGUCGUCGCGCGUGc--UGC-GCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 234116 0.67 0.824181
Target:  5'- -gCAGCAGCGUGCccgcgucGCGcUGCGAcCACu -3'
miRNA:   3'- ugGUCGUCGCGCG-------UGCuGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 233735 0.69 0.736368
Target:  5'- -gCAGCAGCGuCGCGCG-CGgGGUgccCACg -3'
miRNA:   3'- ugGUCGUCGC-GCGUGCuGCgCUA---GUG- -5'
30198 3' -58.3 NC_006273.1 + 233527 0.68 0.791076
Target:  5'- gGCCguAGCAGCGaCGCgggguGCGGCGcCGA-CGCg -3'
miRNA:   3'- -UGG--UCGUCGC-GCG-----UGCUGC-GCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 233524 0.66 0.891218
Target:  5'- aGCCuguucGCGGCaGCGUACGACGUuccaGUCAg -3'
miRNA:   3'- -UGGu----CGUCG-CGCGUGCUGCGc---UAGUg -5'
30198 3' -58.3 NC_006273.1 + 233350 0.66 0.877866
Target:  5'- uCCuGCcauCGCGCACGGCGCGucccCGCc -3'
miRNA:   3'- uGGuCGuc-GCGCGUGCUGCGCua--GUG- -5'
30198 3' -58.3 NC_006273.1 + 233137 0.7 0.68839
Target:  5'- cACCAGCAugGCGCGCGGCaCGGUCc- -3'
miRNA:   3'- -UGGUCGUcgCGCGUGCUGcGCUAGug -5'
30198 3' -58.3 NC_006273.1 + 233058 0.66 0.877866
Target:  5'- --aAGCAGCGUggcgGCGaaaGACGCGAUCc- -3'
miRNA:   3'- uggUCGUCGCG----CGUg--CUGCGCUAGug -5'
30198 3' -58.3 NC_006273.1 + 233020 0.67 0.8637
Target:  5'- cGCCAGC-GCGCccaGCACGccCGCGcgCAg -3'
miRNA:   3'- -UGGUCGuCGCG---CGUGCu-GCGCuaGUg -5'
30198 3' -58.3 NC_006273.1 + 232971 0.66 0.903122
Target:  5'- -gCAGCAGcCGcCGCGCGGCcucggcgGCGggCGCc -3'
miRNA:   3'- ugGUCGUC-GC-GCGUGCUG-------CGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 232877 0.66 0.903727
Target:  5'- uGCCcguGCGGCuCGCGCGcccacaGCGCGG-CGCg -3'
miRNA:   3'- -UGGu--CGUCGcGCGUGC------UGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 218397 0.69 0.745744
Target:  5'- aGCCAGCGaaacuGC-CGCGCGuaguCGCGGUCuACg -3'
miRNA:   3'- -UGGUCGU-----CGcGCGUGCu---GCGCUAG-UG- -5'
30198 3' -58.3 NC_006273.1 + 214927 0.66 0.89758
Target:  5'- aGCgAGCgAGUgGgGCACgguGACGUGGUCACg -3'
miRNA:   3'- -UGgUCG-UCG-CgCGUG---CUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 214414 0.67 0.855576
Target:  5'- cACCAcGUAGaCGCaGCugaugcauuuccaGCGACGuCGGUCACg -3'
miRNA:   3'- -UGGU-CGUC-GCG-CG-------------UGCUGC-GCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 213113 0.67 0.841014
Target:  5'- gGCCAcCAGCGCGUggcuGCGAUggaGCGG-CACg -3'
miRNA:   3'- -UGGUcGUCGCGCG----UGCUG---CGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 208528 0.71 0.609759
Target:  5'- uACCAGCgAGCuGCGgAUGAUGUGGcUCACg -3'
miRNA:   3'- -UGGUCG-UCG-CGCgUGCUGCGCU-AGUG- -5'
30198 3' -58.3 NC_006273.1 + 206823 0.66 0.891218
Target:  5'- gGCCGGCuGCaUGCACauccACGCGuUCGCg -3'
miRNA:   3'- -UGGUCGuCGcGCGUGc---UGCGCuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 204710 0.7 0.68839
Target:  5'- cGCCGGCgagccccgaGGCGCGCcCGcUGCGAUCuGCg -3'
miRNA:   3'- -UGGUCG---------UCGCGCGuGCuGCGCUAG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.