miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 61265 0.71 0.628478
Target:  5'- aGCCAcugcagcGCGGCGCGCGCGGC-CGAggccgugUACa -3'
miRNA:   3'- -UGGU-------CGUCGCGCGUGCUGcGCUa------GUG- -5'
30198 3' -58.3 NC_006273.1 + 187946 0.74 0.485295
Target:  5'- -gCAGCAGCGCGUucgACGACGuCGuacgaGUCGCg -3'
miRNA:   3'- ugGUCGUCGCGCG---UGCUGC-GC-----UAGUG- -5'
30198 3' -58.3 NC_006273.1 + 37197 0.73 0.522561
Target:  5'- uACCaAGCAGCGUuuGCGACGCGGccgacgCGCg -3'
miRNA:   3'- -UGG-UCGUCGCGcgUGCUGCGCUa-----GUG- -5'
30198 3' -58.3 NC_006273.1 + 163033 0.73 0.532053
Target:  5'- cCCAGCAGCGCcCACaGCGCGggCGa -3'
miRNA:   3'- uGGUCGUCGCGcGUGcUGCGCuaGUg -5'
30198 3' -58.3 NC_006273.1 + 194816 0.73 0.541606
Target:  5'- cACCGGCAGCGCGCagaaaGCGcCGUGGaCAg -3'
miRNA:   3'- -UGGUCGUCGCGCG-----UGCuGCGCUaGUg -5'
30198 3' -58.3 NC_006273.1 + 142065 0.72 0.551217
Target:  5'- -gCGGCAGCGcCGCcaGCGGCGaCGGUUACc -3'
miRNA:   3'- ugGUCGUCGC-GCG--UGCUGC-GCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 84723 0.72 0.570586
Target:  5'- uCCAGCAGCGaugagGCGCGuCGUGGUCu- -3'
miRNA:   3'- uGGUCGUCGCg----CGUGCuGCGCUAGug -5'
30198 3' -58.3 NC_006273.1 + 196152 0.72 0.580333
Target:  5'- cGCaAGUGGuCGCaGCGCGACGCGggCACg -3'
miRNA:   3'- -UGgUCGUC-GCG-CGUGCUGCGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 208528 0.71 0.609759
Target:  5'- uACCAGCgAGCuGCGgAUGAUGUGGcUCACg -3'
miRNA:   3'- -UGGUCG-UCG-CGCgUGCUGCGCU-AGUG- -5'
30198 3' -58.3 NC_006273.1 + 72220 0.74 0.485295
Target:  5'- cACCAGCgAGCGCGCAUccaGAUGgCGcUCGCa -3'
miRNA:   3'- -UGGUCG-UCGCGCGUG---CUGC-GCuAGUG- -5'
30198 3' -58.3 NC_006273.1 + 141740 0.74 0.476176
Target:  5'- cCCAGCAGgGCGCGcCGGCGCcagugGAUgCGCg -3'
miRNA:   3'- uGGUCGUCgCGCGU-GCUGCG-----CUA-GUG- -5'
30198 3' -58.3 NC_006273.1 + 133474 0.74 0.467142
Target:  5'- -aCGGCGGCGUGCA-GGCGCGGaCGCu -3'
miRNA:   3'- ugGUCGUCGCGCGUgCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 141 0.76 0.358732
Target:  5'- gACguGCGGCGCGCACGGCGaaaagcaGAcgCGCg -3'
miRNA:   3'- -UGguCGUCGCGCGUGCUGCg------CUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 234972 0.76 0.358732
Target:  5'- gACguGCGGCGCGCACGGCGaaaagcaGAcgCGCg -3'
miRNA:   3'- -UGguCGUCGCGCGUGCUGCg------CUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 103514 0.76 0.382148
Target:  5'- cGCCAGguGCGUGCcguCGAUGCGGcCGCc -3'
miRNA:   3'- -UGGUCguCGCGCGu--GCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 113615 0.75 0.414912
Target:  5'- gGCCguGGUA-CGCGCGCGAcccCGCGGUCACg -3'
miRNA:   3'- -UGG--UCGUcGCGCGUGCU---GCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 165047 0.75 0.43538
Target:  5'- gGCgCGGCAGCGgugcucacgggcagaCGCACGGCGCGGUUg- -3'
miRNA:   3'- -UG-GUCGUCGC---------------GCGUGCUGCGCUAGug -5'
30198 3' -58.3 NC_006273.1 + 196921 0.74 0.440587
Target:  5'- cGCCGGCGGgGaCGCGCcguGCGCGAUgGCa -3'
miRNA:   3'- -UGGUCGUCgC-GCGUGc--UGCGCUAgUG- -5'
30198 3' -58.3 NC_006273.1 + 62131 0.74 0.449344
Target:  5'- gGCCAGCAGC-CGCugGucCGCcggguGAUCACg -3'
miRNA:   3'- -UGGUCGUCGcGCGugCu-GCG-----CUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 148920 0.74 0.449344
Target:  5'- cACCGGCGGUGCGCacccgccgagcgACGACGCuacuuUCACc -3'
miRNA:   3'- -UGGUCGUCGCGCG------------UGCUGCGcu---AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.