miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 3' -58.3 NC_006273.1 + 125635 0.79 0.239872
Target:  5'- uCCAGUAGCGgGC--GACGCGAUCACu -3'
miRNA:   3'- uGGUCGUCGCgCGugCUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 197974 0.72 0.560878
Target:  5'- -gUAGCGGCGCGCccCGGCGCucaGUCGCg -3'
miRNA:   3'- ugGUCGUCGCGCGu-GCUGCGc--UAGUG- -5'
30198 3' -58.3 NC_006273.1 + 1259 0.72 0.580333
Target:  5'- cGCaAGUGGuCGCaGCGCGACGCGggCACg -3'
miRNA:   3'- -UGgUCGUC-GCG-CGUGCUGCGCuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 198241 0.66 0.903727
Target:  5'- gGCCGaccuGUGCGUGCGACGCGAcUAUg -3'
miRNA:   3'- -UGGUcgu-CGCGCGUGCUGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 63823 0.75 0.414912
Target:  5'- cACCGGCAGCG-GCACGcCGCGAg--- -3'
miRNA:   3'- -UGGUCGUCGCgCGUGCuGCGCUagug -5'
30198 3' -58.3 NC_006273.1 + 141317 0.75 0.431928
Target:  5'- uACCGGC-GCauGCGCACGACGCGcAUC-Ca -3'
miRNA:   3'- -UGGUCGuCG--CGCGUGCUGCGC-UAGuG- -5'
30198 3' -58.3 NC_006273.1 + 146330 0.74 0.440587
Target:  5'- cGCgGGUAGCGUGUuuuuuCGcCGCGAUCACg -3'
miRNA:   3'- -UGgUCGUCGCGCGu----GCuGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 159815 0.74 0.440587
Target:  5'- gGCCAGCGGCGCGCACaGuCGC---CGCa -3'
miRNA:   3'- -UGGUCGUCGCGCGUG-CuGCGcuaGUG- -5'
30198 3' -58.3 NC_006273.1 + 6377 0.73 0.494497
Target:  5'- cCCAaCGGcCGCGCAaGGCGUGAUCACg -3'
miRNA:   3'- uGGUcGUC-GCGCGUgCUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 153593 0.72 0.551217
Target:  5'- -gCGGCGGCGUGaccgGCGGUGCGGUCGCg -3'
miRNA:   3'- ugGUCGUCGCGCg---UGCUGCGCUAGUG- -5'
30198 3' -58.3 NC_006273.1 + 70761 0.73 0.503779
Target:  5'- cGCCcgAGCAG-GUGCGCGugGUGAUCGu -3'
miRNA:   3'- -UGG--UCGUCgCGCGUGCugCGCUAGUg -5'
30198 3' -58.3 NC_006273.1 + 25501 0.74 0.485295
Target:  5'- uGCUAcGCGGCGCcCGCGACGUGGuuUCACc -3'
miRNA:   3'- -UGGU-CGUCGCGcGUGCUGCGCU--AGUG- -5'
30198 3' -58.3 NC_006273.1 + 40079 0.76 0.358732
Target:  5'- gACguGCGGCGCGCACGGCGaaaagcaGAcgCGCg -3'
miRNA:   3'- -UGguCGUCGCGCGUGCUGCg------CUa-GUG- -5'
30198 3' -58.3 NC_006273.1 + 87492 0.73 0.532053
Target:  5'- gGCCAgcGCAGCGUaGCugG-CGCGAUgCACa -3'
miRNA:   3'- -UGGU--CGUCGCG-CGugCuGCGCUA-GUG- -5'
30198 3' -58.3 NC_006273.1 + 189908 0.76 0.374231
Target:  5'- aACCAGCugguugaagAGCGCGCACacGCGCGA-CACa -3'
miRNA:   3'- -UGGUCG---------UCGCGCGUGc-UGCGCUaGUG- -5'
30198 3' -58.3 NC_006273.1 + 178973 0.74 0.476176
Target:  5'- gGCC-GCGugccugggaacGUGCGCACGGCGCGGUCccGCg -3'
miRNA:   3'- -UGGuCGU-----------CGCGCGUGCUGCGCUAG--UG- -5'
30198 3' -58.3 NC_006273.1 + 234754 0.73 0.541606
Target:  5'- cACCGGCAGCGCGCagaaaGCGcCGUGGaCAg -3'
miRNA:   3'- -UGGUCGUCGCGCG-----UGCuGCGCUaGUg -5'
30198 3' -58.3 NC_006273.1 + 92316 0.72 0.567669
Target:  5'- cGCaCAGCgcGGCGCGCACGAucucgcugggguugUGCGGguUCACg -3'
miRNA:   3'- -UG-GUCG--UCGCGCGUGCU--------------GCGCU--AGUG- -5'
30198 3' -58.3 NC_006273.1 + 92619 0.75 0.398314
Target:  5'- cGCCAGCGGCGCGCGUG-CG-GAUCAg -3'
miRNA:   3'- -UGGUCGUCGCGCGUGCuGCgCUAGUg -5'
30198 3' -58.3 NC_006273.1 + 2028 0.74 0.440587
Target:  5'- cGCCGGCGGgGaCGCGCcguGCGCGAUgGCa -3'
miRNA:   3'- -UGGUCGUCgC-GCGUGc--UGCGCUAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.