miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 5' -51.5 NC_006273.1 + 152075 0.66 0.998526
Target:  5'- uCCAc--CcGGACCaCGCGCGGGUAGUa -3'
miRNA:   3'- -GGUacuGaUCUGG-GUGCGUCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 141263 0.66 0.998526
Target:  5'- cCCAUGcccgGCacgGGGCUCGCGCucccuAGGUgcGGCCg -3'
miRNA:   3'- -GGUAC----UGa--UCUGGGUGCG-----UCUA--UCGG- -5'
30198 5' -51.5 NC_006273.1 + 67167 0.66 0.998359
Target:  5'- aCGUGAggauCUGcGugCCgccaacgccacguacGCGCAGAUGGUCa -3'
miRNA:   3'- gGUACU----GAU-CugGG---------------UGCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 145901 0.66 0.998239
Target:  5'- -gGUGGC-GGGCgCCACGCAG---GCCu -3'
miRNA:   3'- ggUACUGaUCUG-GGUGCGUCuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 15130 0.66 0.998239
Target:  5'- gCGUGACgGGACgUccgcggccgggACGCAGuuuuGUGGCCg -3'
miRNA:   3'- gGUACUGaUCUGgG-----------UGCGUC----UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 95250 0.66 0.998144
Target:  5'- gCGUGugUGcuGGCCgAUGCGGcggcgagguuggguGUGGCCg -3'
miRNA:   3'- gGUACugAU--CUGGgUGCGUC--------------UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 144048 0.66 0.997905
Target:  5'- gCCAaGAUgcugcGGGCCCACGguacgcCAG-UAGCCg -3'
miRNA:   3'- -GGUaCUGa----UCUGGGUGC------GUCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 73324 0.66 0.997905
Target:  5'- gCCAUGACc--GCgCCACaGCAGA--GCCa -3'
miRNA:   3'- -GGUACUGaucUG-GGUG-CGUCUauCGG- -5'
30198 5' -51.5 NC_006273.1 + 130976 0.66 0.997905
Target:  5'- -aGUG-CUcGGACUCGCgGCGGGUGGCg -3'
miRNA:   3'- ggUACuGA-UCUGGGUG-CGUCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 189046 0.66 0.997905
Target:  5'- gCGUGGuggGGGCCCggaccggcgGCGUAGGcGGCCg -3'
miRNA:   3'- gGUACUga-UCUGGG---------UGCGUCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 122003 0.66 0.99752
Target:  5'- gCCA-GGCaggucAGGCCCgaACGCAGAUAuuGCUg -3'
miRNA:   3'- -GGUaCUGa----UCUGGG--UGCGUCUAU--CGG- -5'
30198 5' -51.5 NC_006273.1 + 71466 0.66 0.997394
Target:  5'- aCA-GACUGGACaugCGCGUAuacuugcucagcauGGUGGCCa -3'
miRNA:   3'- gGUaCUGAUCUGg--GUGCGU--------------CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 113423 0.66 0.997078
Target:  5'- -uGUGGaagguGACCaACGCGGAUAGCg -3'
miRNA:   3'- ggUACUgau--CUGGgUGCGUCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 205139 0.66 0.997078
Target:  5'- -gAUGACgcAGGCCC-CGCAGAacAGUCc -3'
miRNA:   3'- ggUACUGa-UCUGGGuGCGUCUa-UCGG- -5'
30198 5' -51.5 NC_006273.1 + 67473 0.66 0.997078
Target:  5'- gCGUGuCUuGGCCCGgGCAccgAGCCa -3'
miRNA:   3'- gGUACuGAuCUGGGUgCGUcuaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 8139 0.66 0.997078
Target:  5'- gUCGggGAgaGGGCCUGuCGgAGAUGGCCg -3'
miRNA:   3'- -GGUa-CUgaUCUGGGU-GCgUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 5738 0.66 0.997078
Target:  5'- -uGUGACUGGACCgGuuccuaGCAGcucugggAGCCa -3'
miRNA:   3'- ggUACUGAUCUGGgUg-----CGUCua-----UCGG- -5'
30198 5' -51.5 NC_006273.1 + 8806 0.66 0.996934
Target:  5'- aCCAUG-CUAGGCgCauacucggccugggGCGCGGGcucguucgUGGCCa -3'
miRNA:   3'- -GGUACuGAUCUGgG--------------UGCGUCU--------AUCGG- -5'
30198 5' -51.5 NC_006273.1 + 124336 0.66 0.996573
Target:  5'- aCCGUGAagacGACCUguuCGCGGAUgaGGUCa -3'
miRNA:   3'- -GGUACUgau-CUGGGu--GCGUCUA--UCGG- -5'
30198 5' -51.5 NC_006273.1 + 207936 0.66 0.996573
Target:  5'- aCCGUGguaACggagaggAGGCCUACGUAGcccAUGGUCa -3'
miRNA:   3'- -GGUAC---UGa------UCUGGGUGCGUC---UAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.