Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 113423 | 0.66 | 0.997078 |
Target: 5'- -uGUGGaagguGACCaACGCGGAUAGCg -3' miRNA: 3'- ggUACUgau--CUGGgUGCGUCUAUCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 8806 | 0.66 | 0.996934 |
Target: 5'- aCCAUG-CUAGGCgCauacucggccugggGCGCGGGcucguucgUGGCCa -3' miRNA: 3'- -GGUACuGAUCUGgG--------------UGCGUCU--------AUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 5738 | 0.66 | 0.997078 |
Target: 5'- -uGUGACUGGACCgGuuccuaGCAGcucugggAGCCa -3' miRNA: 3'- ggUACUGAUCUGGgUg-----CGUCua-----UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 8139 | 0.66 | 0.997078 |
Target: 5'- gUCGggGAgaGGGCCUGuCGgAGAUGGCCg -3' miRNA: 3'- -GGUa-CUgaUCUGGGU-GCgUCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 126612 | 0.66 | 0.996573 |
Target: 5'- gUCGUcGCUcaACgCCGCGCAGAUGGUg -3' miRNA: 3'- -GGUAcUGAucUG-GGUGCGUCUAUCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 67473 | 0.66 | 0.997078 |
Target: 5'- gCGUGuCUuGGCCCGgGCAccgAGCCa -3' miRNA: 3'- gGUACuGAuCUGGGUgCGUcuaUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 205139 | 0.66 | 0.997078 |
Target: 5'- -gAUGACgcAGGCCC-CGCAGAacAGUCc -3' miRNA: 3'- ggUACUGa-UCUGGGuGCGUCUa-UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 71466 | 0.66 | 0.997394 |
Target: 5'- aCA-GACUGGACaugCGCGUAuacuugcucagcauGGUGGCCa -3' miRNA: 3'- gGUaCUGAUCUGg--GUGCGU--------------CUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 73324 | 0.66 | 0.997905 |
Target: 5'- gCCAUGACc--GCgCCACaGCAGA--GCCa -3' miRNA: 3'- -GGUACUGaucUG-GGUG-CGUCUauCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 124336 | 0.66 | 0.996573 |
Target: 5'- aCCGUGAagacGACCUguuCGCGGAUgaGGUCa -3' miRNA: 3'- -GGUACUgau-CUGGGu--GCGUCUA--UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 207936 | 0.66 | 0.996573 |
Target: 5'- aCCGUGguaACggagaggAGGCCUACGUAGcccAUGGUCa -3' miRNA: 3'- -GGUAC---UGa------UCUGGGUGCGUC---UAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 129977 | 0.66 | 0.996573 |
Target: 5'- aCGUGGCcacgcauGugCUACGCGGAUuGCUc -3' miRNA: 3'- gGUACUGau-----CugGGUGCGUCUAuCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 95250 | 0.66 | 0.998144 |
Target: 5'- gCGUGugUGcuGGCCgAUGCGGcggcgagguuggguGUGGCCg -3' miRNA: 3'- gGUACugAU--CUGGgUGCGUC--------------UAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 144048 | 0.66 | 0.997905 |
Target: 5'- gCCAaGAUgcugcGGGCCCACGguacgcCAG-UAGCCg -3' miRNA: 3'- -GGUaCUGa----UCUGGGUGC------GUCuAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 187892 | 0.66 | 0.996573 |
Target: 5'- ----aGCUGGGCCuCGCGCGGcucGCCg -3' miRNA: 3'- gguacUGAUCUGG-GUGCGUCuauCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 141263 | 0.66 | 0.998526 |
Target: 5'- cCCAUGcccgGCacgGGGCUCGCGCucccuAGGUgcGGCCg -3' miRNA: 3'- -GGUAC----UGa--UCUGGGUGCG-----UCUA--UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 152075 | 0.66 | 0.998526 |
Target: 5'- uCCAc--CcGGACCaCGCGCGGGUAGUa -3' miRNA: 3'- -GGUacuGaUCUGG-GUGCGUCUAUCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 56271 | 0.66 | 0.996573 |
Target: 5'- aCgGUGGCUGGucuGCUgGgGCGGGUacGGCCg -3' miRNA: 3'- -GgUACUGAUC---UGGgUgCGUCUA--UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 67167 | 0.66 | 0.998359 |
Target: 5'- aCGUGAggauCUGcGugCCgccaacgccacguacGCGCAGAUGGUCa -3' miRNA: 3'- gGUACU----GAU-CugGG---------------UGCGUCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 122003 | 0.66 | 0.99752 |
Target: 5'- gCCA-GGCaggucAGGCCCgaACGCAGAUAuuGCUg -3' miRNA: 3'- -GGUaCUGa----UCUGGG--UGCGUCUAU--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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