miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 5' -51.5 NC_006273.1 + 67167 0.66 0.998359
Target:  5'- aCGUGAggauCUGcGugCCgccaacgccacguacGCGCAGAUGGUCa -3'
miRNA:   3'- gGUACU----GAU-CugGG---------------UGCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 95250 0.66 0.998144
Target:  5'- gCGUGugUGcuGGCCgAUGCGGcggcgagguuggguGUGGCCg -3'
miRNA:   3'- gGUACugAU--CUGGgUGCGUC--------------UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 189046 0.66 0.997905
Target:  5'- gCGUGGuggGGGCCCggaccggcgGCGUAGGcGGCCg -3'
miRNA:   3'- gGUACUga-UCUGGG---------UGCGUCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 144048 0.66 0.997905
Target:  5'- gCCAaGAUgcugcGGGCCCACGguacgcCAG-UAGCCg -3'
miRNA:   3'- -GGUaCUGa----UCUGGGUGC------GUCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 219531 0.67 0.995998
Target:  5'- gUCAgagGAUgAGaACCCACGuCAGA-AGCCu -3'
miRNA:   3'- -GGUa--CUGaUC-UGGGUGC-GUCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 36750 0.67 0.993783
Target:  5'- cUCA-GACcGGGCuCCG-GCGGGUGGCCu -3'
miRNA:   3'- -GGUaCUGaUCUG-GGUgCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 185330 0.67 0.992758
Target:  5'- gUCAUGGac-GACCuacgggaCACGCuGAUGGCCu -3'
miRNA:   3'- -GGUACUgauCUGG-------GUGCGuCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 167509 0.67 0.996237
Target:  5'- uCCAUGGCcgcaGGGCCCGagaucccgggauucUGCGGGUgcugaccgagugcgGGCCg -3'
miRNA:   3'- -GGUACUGa---UCUGGGU--------------GCGUCUA--------------UCGG- -5'
30198 5' -51.5 NC_006273.1 + 125282 0.67 0.995346
Target:  5'- gCGUGGCgcguccGGGCCCGCGUuugcgucuAGGUGacucGCCg -3'
miRNA:   3'- gGUACUGa-----UCUGGGUGCG--------UCUAU----CGG- -5'
30198 5' -51.5 NC_006273.1 + 87481 0.67 0.99461
Target:  5'- gUCAcGGCcgAGGCCaGCGCAGcGUAGCUg -3'
miRNA:   3'- -GGUaCUGa-UCUGGgUGCGUC-UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 158713 0.67 0.99461
Target:  5'- cCCGUGACgcccGCCUgACGCAGGacgUGGCa -3'
miRNA:   3'- -GGUACUGauc-UGGG-UGCGUCU---AUCGg -5'
30198 5' -51.5 NC_006273.1 + 22273 0.67 0.995998
Target:  5'- uCCAUcGC-AG-CCaCGCGCuGGUGGCCg -3'
miRNA:   3'- -GGUAcUGaUCuGG-GUGCGuCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 29294 0.67 0.992857
Target:  5'- aCCA-GACgcuggAGGgCUACGCGGAUcgaguGCCg -3'
miRNA:   3'- -GGUaCUGa----UCUgGGUGCGUCUAu----CGG- -5'
30198 5' -51.5 NC_006273.1 + 167230 0.67 0.995062
Target:  5'- gCGUGACggagcugcucccgGGAUCCugGCGCAGcgAGCg -3'
miRNA:   3'- gGUACUGa------------UCUGGG--UGCGUCuaUCGg -5'
30198 5' -51.5 NC_006273.1 + 126986 0.67 0.992857
Target:  5'- aCC-UGACgUGGAgaCCGCGguGGcGGCCg -3'
miRNA:   3'- -GGuACUG-AUCUg-GGUGCguCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 206142 0.67 0.993783
Target:  5'- gCAcgGACaGGuuCCCGCGCAGGguccacagAGCCu -3'
miRNA:   3'- gGUa-CUGaUCu-GGGUGCGUCUa-------UCGG- -5'
30198 5' -51.5 NC_006273.1 + 68802 0.67 0.99461
Target:  5'- ---cGACUGGaACCCggACGC--GUAGCCg -3'
miRNA:   3'- gguaCUGAUC-UGGG--UGCGucUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 70424 0.68 0.991824
Target:  5'- aCCA--GCUGGACCCGcCGCuGcUAcGCCa -3'
miRNA:   3'- -GGUacUGAUCUGGGU-GCGuCuAU-CGG- -5'
30198 5' -51.5 NC_006273.1 + 83598 0.68 0.991824
Target:  5'- uCCAUGAgcCUGGGCgCGCGCGac--GCCg -3'
miRNA:   3'- -GGUACU--GAUCUGgGUGCGUcuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 127563 0.68 0.988002
Target:  5'- aCGUGACUuauAGugCUaccgcugcuguaACGCGGGUuGCCa -3'
miRNA:   3'- gGUACUGA---UCugGG------------UGCGUCUAuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.