miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 5' -51.5 NC_006273.1 + 191189 1.16 0.0051
Target:  5'- cCCAUGACUAGACCCACGCAGAUAGCCa -3'
miRNA:   3'- -GGUACUGAUCUGGGUGCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 79043 0.8 0.587821
Target:  5'- gCCA-GGCUGGGCCCACGCGccaccagAGCCu -3'
miRNA:   3'- -GGUaCUGAUCUGGGUGCGUcua----UCGG- -5'
30198 5' -51.5 NC_006273.1 + 78958 0.79 0.638696
Target:  5'- gCCGUcGACU-GACCCACGCGGGaugUAcGCCg -3'
miRNA:   3'- -GGUA-CUGAuCUGGGUGCGUCU---AU-CGG- -5'
30198 5' -51.5 NC_006273.1 + 48089 0.77 0.699475
Target:  5'- cCCGUGACgGGAUCCgcgACGCAGuucaccaccGUAGCCa -3'
miRNA:   3'- -GGUACUGaUCUGGG---UGCGUC---------UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 26585 0.76 0.786224
Target:  5'- gCCAUcGcCUGGGCCCAUGCAcauGGUGGUCu -3'
miRNA:   3'- -GGUA-CuGAUCUGGGUGCGU---CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 163960 0.75 0.795295
Target:  5'- gCCuuuaaGCUGGACCUguuGCGCAuGAUAGCCg -3'
miRNA:   3'- -GGuac--UGAUCUGGG---UGCGU-CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 28955 0.74 0.854242
Target:  5'- cCCGUGACgugcaAGACUaCAUGCuauaAGAUAGCCu -3'
miRNA:   3'- -GGUACUGa----UCUGG-GUGCG----UCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 46043 0.74 0.869394
Target:  5'- ---gGAacugGGGCUCAUGCGGGUGGCCa -3'
miRNA:   3'- gguaCUga--UCUGGGUGCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 208800 0.73 0.876656
Target:  5'- aCCAUGugcaUGGGCCCAgGC-GAUGGCg -3'
miRNA:   3'- -GGUACug--AUCUGGGUgCGuCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 80710 0.73 0.897124
Target:  5'- uCCAcGuCUGGGCCCAccugccCGCAGGU-GCCg -3'
miRNA:   3'- -GGUaCuGAUCUGGGU------GCGUCUAuCGG- -5'
30198 5' -51.5 NC_006273.1 + 153599 0.72 0.915534
Target:  5'- gCGUGACcggcGGugCgGuCGCGGGUGGCCg -3'
miRNA:   3'- gGUACUGa---UCugGgU-GCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 163441 0.72 0.915534
Target:  5'- gCCGUG-CUGGGCCUcaACGCGGcuuguGCCg -3'
miRNA:   3'- -GGUACuGAUCUGGG--UGCGUCuau--CGG- -5'
30198 5' -51.5 NC_006273.1 + 36642 0.72 0.915534
Target:  5'- cCCAUGcgggaACUGGcCUgGCgGCGGGUAGCCg -3'
miRNA:   3'- -GGUAC-----UGAUCuGGgUG-CGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 187184 0.72 0.921202
Target:  5'- gCGUGugUGGGCCgGCccucgggguGCGGGUGGCg -3'
miRNA:   3'- gGUACugAUCUGGgUG---------CGUCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 21650 0.72 0.926632
Target:  5'- gCC-UGGCgaccgAGACCacgGCGCuGGUGGCCg -3'
miRNA:   3'- -GGuACUGa----UCUGGg--UGCGuCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 173788 0.72 0.931825
Target:  5'- gCCAUca-UGGACgCGCGCGcGGUGGCCa -3'
miRNA:   3'- -GGUAcugAUCUGgGUGCGU-CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 234152 0.72 0.936782
Target:  5'- gCAUGGCgcGGCCCGUGCuGuUGGCCa -3'
miRNA:   3'- gGUACUGauCUGGGUGCGuCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 39259 0.72 0.936782
Target:  5'- gCAUGGCgcGGCCCGUGCuGuUGGCCa -3'
miRNA:   3'- gGUACUGauCUGGGUGCGuCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 212885 0.71 0.940111
Target:  5'- -gGUGugUGGGCgaaacucggcgaaaCCGCGUAGcAUAGCCa -3'
miRNA:   3'- ggUACugAUCUG--------------GGUGCGUC-UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 49318 0.71 0.941502
Target:  5'- uCCAUGGuCUGGaugcugccGCCCGCGCGGAcgacGCUg -3'
miRNA:   3'- -GGUACU-GAUC--------UGGGUGCGUCUau--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.