Results 21 - 40 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 49318 | 0.71 | 0.941502 |
Target: 5'- uCCAUGGuCUGGaugcugccGCCCGCGCGGAcgacGCUg -3' miRNA: 3'- -GGUACU-GAUC--------UGGGUGCGUCUau--CGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 90279 | 0.71 | 0.945988 |
Target: 5'- gCCcgGGCU--GCCC-CGCAGGUGGUg -3' miRNA: 3'- -GGuaCUGAucUGGGuGCGUCUAUCGg -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 117744 | 0.71 | 0.950241 |
Target: 5'- gCCA--ACUGGucguaACCCACGCGGGggcGCCg -3' miRNA: 3'- -GGUacUGAUC-----UGGGUGCGUCUau-CGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 114628 | 0.71 | 0.954265 |
Target: 5'- gCCGUGuucacCUGGccGCCCugGCAGGccggcauccUGGCCc -3' miRNA: 3'- -GGUACu----GAUC--UGGGugCGUCU---------AUCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 167680 | 0.71 | 0.957693 |
Target: 5'- gCguUGAuCUAGGCCCAagaGCAGcucgaguGUGGCCu -3' miRNA: 3'- -GguACU-GAUCUGGGUg--CGUC-------UAUCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 155682 | 0.71 | 0.958063 |
Target: 5'- aCCGUGGCUAcGGCCUcacuucGCGCAc--GGCCa -3' miRNA: 3'- -GGUACUGAU-CUGGG------UGCGUcuaUCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 153824 | 0.7 | 0.961639 |
Target: 5'- uCCuUGGCgcgAGACCCugGUGGGUcGCg -3' miRNA: 3'- -GGuACUGa--UCUGGGugCGUCUAuCGg -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 62720 | 0.7 | 0.964998 |
Target: 5'- gCGUGcaacggcuACUAGAUCUgACGCAGAUGGUa -3' miRNA: 3'- gGUAC--------UGAUCUGGG-UGCGUCUAUCGg -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 2664 | 0.7 | 0.964998 |
Target: 5'- uCUggGACUGGACuuggCCACGguGGUuauggaAGCCg -3' miRNA: 3'- -GGuaCUGAUCUG----GGUGCguCUA------UCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 223306 | 0.7 | 0.968145 |
Target: 5'- cCCAgGGCguuucGGGCCCGuCGguGAcAGCCg -3' miRNA: 3'- -GGUaCUGa----UCUGGGU-GCguCUaUCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 36041 | 0.7 | 0.971086 |
Target: 5'- ---gGGCU--GCCCGCGCAGAUAGa- -3' miRNA: 3'- gguaCUGAucUGGGUGCGUCUAUCgg -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 126457 | 0.7 | 0.971086 |
Target: 5'- gUCAUGACUgAGugCaaCACGUugggacAGGUGGCCg -3' miRNA: 3'- -GGUACUGA-UCugG--GUGCG------UCUAUCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 138143 | 0.7 | 0.971086 |
Target: 5'- uCCAUGACgcGGCUCAUgGCGGc-GGCCa -3' miRNA: 3'- -GGUACUGauCUGGGUG-CGUCuaUCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 196709 | 0.7 | 0.971086 |
Target: 5'- gCGUGGCaGGAgCUgGCGCAGuacgAGCCg -3' miRNA: 3'- gGUACUGaUCU-GGgUGCGUCua--UCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 163166 | 0.7 | 0.971086 |
Target: 5'- gCCAU--CUGGAUgCGCGCucgcuGGUGGCCg -3' miRNA: 3'- -GGUAcuGAUCUGgGUGCGu----CUAUCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 1817 | 0.7 | 0.971086 |
Target: 5'- gCGUGGCaGGAgCUgGCGCAGuacgAGCCg -3' miRNA: 3'- gGUACUGaUCU-GGgUGCGUCua--UCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 206917 | 0.7 | 0.973827 |
Target: 5'- gCCA-GGCUAGGCCCguacaccagACGCAGA--GCa -3' miRNA: 3'- -GGUaCUGAUCUGGG---------UGCGUCUauCGg -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 94266 | 0.7 | 0.973827 |
Target: 5'- aCGUGAUgAGACCCGCGUcguucagcgAGAgAGCg -3' miRNA: 3'- gGUACUGaUCUGGGUGCG---------UCUaUCGg -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 162000 | 0.69 | 0.976374 |
Target: 5'- gCCGUGGCU--GCCCGCGCGcuuugcGAcucugGGCCc -3' miRNA: 3'- -GGUACUGAucUGGGUGCGU------CUa----UCGG- -5' |
|||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 56424 | 0.69 | 0.976374 |
Target: 5'- cCCAggcACgcGGCCCACGCuc-UAGCCg -3' miRNA: 3'- -GGUac-UGauCUGGGUGCGucuAUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home