Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 207936 | 0.66 | 0.996573 |
Target: 5'- aCCGUGguaACggagaggAGGCCUACGUAGcccAUGGUCa -3' miRNA: 3'- -GGUAC---UGa------UCUGGGUGCGUC---UAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 129977 | 0.66 | 0.996573 |
Target: 5'- aCGUGGCcacgcauGugCUACGCGGAUuGCUc -3' miRNA: 3'- gGUACUGau-----CugGGUGCGUCUAuCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 187892 | 0.66 | 0.996573 |
Target: 5'- ----aGCUGGGCCuCGCGCGGcucGCCg -3' miRNA: 3'- gguacUGAUCUGG-GUGCGUCuauCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 56271 | 0.66 | 0.996573 |
Target: 5'- aCgGUGGCUGGucuGCUgGgGCGGGUacGGCCg -3' miRNA: 3'- -GgUACUGAUC---UGGgUgCGUCUA--UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 167509 | 0.67 | 0.996237 |
Target: 5'- uCCAUGGCcgcaGGGCCCGagaucccgggauucUGCGGGUgcugaccgagugcgGGCCg -3' miRNA: 3'- -GGUACUGa---UCUGGGU--------------GCGUCUA--------------UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 22273 | 0.67 | 0.995998 |
Target: 5'- uCCAUcGC-AG-CCaCGCGCuGGUGGCCg -3' miRNA: 3'- -GGUAcUGaUCuGG-GUGCGuCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 219531 | 0.67 | 0.995998 |
Target: 5'- gUCAgagGAUgAGaACCCACGuCAGA-AGCCu -3' miRNA: 3'- -GGUa--CUGaUC-UGGGUGC-GUCUaUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 125282 | 0.67 | 0.995346 |
Target: 5'- gCGUGGCgcguccGGGCCCGCGUuugcgucuAGGUGacucGCCg -3' miRNA: 3'- gGUACUGa-----UCUGGGUGCG--------UCUAU----CGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 167230 | 0.67 | 0.995062 |
Target: 5'- gCGUGACggagcugcucccgGGAUCCugGCGCAGcgAGCg -3' miRNA: 3'- gGUACUGa------------UCUGGG--UGCGUCuaUCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 158713 | 0.67 | 0.99461 |
Target: 5'- cCCGUGACgcccGCCUgACGCAGGacgUGGCa -3' miRNA: 3'- -GGUACUGauc-UGGG-UGCGUCU---AUCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 87481 | 0.67 | 0.99461 |
Target: 5'- gUCAcGGCcgAGGCCaGCGCAGcGUAGCUg -3' miRNA: 3'- -GGUaCUGa-UCUGGgUGCGUC-UAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 68802 | 0.67 | 0.99461 |
Target: 5'- ---cGACUGGaACCCggACGC--GUAGCCg -3' miRNA: 3'- gguaCUGAUC-UGGG--UGCGucUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 206142 | 0.67 | 0.993783 |
Target: 5'- gCAcgGACaGGuuCCCGCGCAGGguccacagAGCCu -3' miRNA: 3'- gGUa-CUGaUCu-GGGUGCGUCUa-------UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 36750 | 0.67 | 0.993783 |
Target: 5'- cUCA-GACcGGGCuCCG-GCGGGUGGCCu -3' miRNA: 3'- -GGUaCUGaUCUG-GGUgCGUCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 29294 | 0.67 | 0.992857 |
Target: 5'- aCCA-GACgcuggAGGgCUACGCGGAUcgaguGCCg -3' miRNA: 3'- -GGUaCUGa----UCUgGGUGCGUCUAu----CGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 126986 | 0.67 | 0.992857 |
Target: 5'- aCC-UGACgUGGAgaCCGCGguGGcGGCCg -3' miRNA: 3'- -GGuACUG-AUCUg-GGUGCguCUaUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 185330 | 0.67 | 0.992758 |
Target: 5'- gUCAUGGac-GACCuacgggaCACGCuGAUGGCCu -3' miRNA: 3'- -GGUACUgauCUGG-------GUGCGuCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 74607 | 0.68 | 0.991824 |
Target: 5'- uCCGUGACUGcaGgUCGCGCAGuc-GCCg -3' miRNA: 3'- -GGUACUGAUc-UgGGUGCGUCuauCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 199397 | 0.68 | 0.991824 |
Target: 5'- gCGUGAugcCUGGACCCACaaGCGcccGA-AGCCg -3' miRNA: 3'- gGUACU---GAUCUGGGUG--CGU---CUaUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 73697 | 0.68 | 0.991824 |
Target: 5'- gCCGUGGagcgAGugCCGCcgcagccgGCAGAgcGCCg -3' miRNA: 3'- -GGUACUga--UCugGGUG--------CGUCUauCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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