miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 5' -51.5 NC_006273.1 + 140620 0.68 0.991824
Target:  5'- gCCcgGAg-GGGCCCAaaagccaGCGGGgcgGGCCg -3'
miRNA:   3'- -GGuaCUgaUCUGGGUg------CGUCUa--UCGG- -5'
30198 5' -51.5 NC_006273.1 + 199397 0.68 0.991824
Target:  5'- gCGUGAugcCUGGACCCACaaGCGcccGA-AGCCg -3'
miRNA:   3'- gGUACU---GAUCUGGGUG--CGU---CUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 70424 0.68 0.991824
Target:  5'- aCCA--GCUGGACCCGcCGCuGcUAcGCCa -3'
miRNA:   3'- -GGUacUGAUCUGGGU-GCGuCuAU-CGG- -5'
30198 5' -51.5 NC_006273.1 + 29066 0.68 0.989404
Target:  5'- cCCu---CUGGGCCCcgguCGCGGGUAGUa -3'
miRNA:   3'- -GGuacuGAUCUGGGu---GCGUCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 105969 0.68 0.989404
Target:  5'- -gGUGACU--GCCCACcgGCAGAUAGgUa -3'
miRNA:   3'- ggUACUGAucUGGGUG--CGUCUAUCgG- -5'
30198 5' -51.5 NC_006273.1 + 79884 0.68 0.988002
Target:  5'- gCCGuccUGACUGGA-CgGCGCAGAUuGCa -3'
miRNA:   3'- -GGU---ACUGAUCUgGgUGCGUCUAuCGg -5'
30198 5' -51.5 NC_006273.1 + 127563 0.68 0.988002
Target:  5'- aCGUGACUuauAGugCUaccgcugcuguaACGCGGGUuGCCa -3'
miRNA:   3'- gGUACUGA---UCugGG------------UGCGUCUAuCGG- -5'
30198 5' -51.5 NC_006273.1 + 85671 0.68 0.988002
Target:  5'- cCCAgGACauGACCCACGgCcGAgAGCCa -3'
miRNA:   3'- -GGUaCUGauCUGGGUGC-GuCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 233387 0.68 0.987094
Target:  5'- gCGUGGCaaUAGGCCuCGagcuugggcuucuccCGCGGAUGGUCg -3'
miRNA:   3'- gGUACUG--AUCUGG-GU---------------GCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 20167 0.68 0.98646
Target:  5'- cCCGaGGCgguaagugAGAUCCugGUgauGAUAGCCg -3'
miRNA:   3'- -GGUaCUGa-------UCUGGGugCGu--CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 173136 0.68 0.98646
Target:  5'- gCAUGAgCgugcAGGCCCA-GUAGAUgAGCCg -3'
miRNA:   3'- gGUACU-Ga---UCUGGGUgCGUCUA-UCGG- -5'
30198 5' -51.5 NC_006273.1 + 118197 0.68 0.98646
Target:  5'- aCCGUGugUAcuCCCAC-CAGcgAGCUg -3'
miRNA:   3'- -GGUACugAUcuGGGUGcGUCuaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 195242 0.68 0.98646
Target:  5'- gCGUGugUccccaaGGACCCGCGCu----GCCg -3'
miRNA:   3'- gGUACugA------UCUGGGUGCGucuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 56955 0.68 0.98646
Target:  5'- uCCAcGGCgaacAGACCguUGCGGcUGGCCa -3'
miRNA:   3'- -GGUaCUGa---UCUGGguGCGUCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 235180 0.68 0.98646
Target:  5'- gCGUGugUccccaaGGACCCGCGCu----GCCg -3'
miRNA:   3'- gGUACugA------UCUGGGUGCGucuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 349 0.68 0.98646
Target:  5'- gCGUGugUccccaaGGACCCGCGCu----GCCg -3'
miRNA:   3'- gGUACugA------UCUGGGUGCGucuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 205085 0.69 0.984946
Target:  5'- aCAUGGaggAGACCCGgGCGGGacguuauauagugagGGCCg -3'
miRNA:   3'- gGUACUga-UCUGGGUgCGUCUa--------------UCGG- -5'
30198 5' -51.5 NC_006273.1 + 108626 0.69 0.98477
Target:  5'- gCCu---CUGGACCaCGCGCAGcgucagGGCCu -3'
miRNA:   3'- -GGuacuGAUCUGG-GUGCGUCua----UCGG- -5'
30198 5' -51.5 NC_006273.1 + 159472 0.69 0.982925
Target:  5'- cCCAUGACcauGGCCCGCaccacgGCuAGAUGGUUc -3'
miRNA:   3'- -GGUACUGau-CUGGGUG------CG-UCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 211638 0.69 0.980915
Target:  5'- ---cGGCUAGACCCGugacgcagcUGCAGA-GGCUa -3'
miRNA:   3'- gguaCUGAUCUGGGU---------GCGUCUaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.