miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 5' -51.5 NC_006273.1 + 349 0.68 0.98646
Target:  5'- gCGUGugUccccaaGGACCCGCGCu----GCCg -3'
miRNA:   3'- gGUACugA------UCUGGGUGCGucuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 1817 0.7 0.971086
Target:  5'- gCGUGGCaGGAgCUgGCGCAGuacgAGCCg -3'
miRNA:   3'- gGUACUGaUCU-GGgUGCGUCua--UCGG- -5'
30198 5' -51.5 NC_006273.1 + 2664 0.7 0.964998
Target:  5'- uCUggGACUGGACuuggCCACGguGGUuauggaAGCCg -3'
miRNA:   3'- -GGuaCUGAUCUG----GGUGCguCUA------UCGG- -5'
30198 5' -51.5 NC_006273.1 + 5738 0.66 0.997078
Target:  5'- -uGUGACUGGACCgGuuccuaGCAGcucugggAGCCa -3'
miRNA:   3'- ggUACUGAUCUGGgUg-----CGUCua-----UCGG- -5'
30198 5' -51.5 NC_006273.1 + 8139 0.66 0.997078
Target:  5'- gUCGggGAgaGGGCCUGuCGgAGAUGGCCg -3'
miRNA:   3'- -GGUa-CUgaUCUGGGU-GCgUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 8806 0.66 0.996934
Target:  5'- aCCAUG-CUAGGCgCauacucggccugggGCGCGGGcucguucgUGGCCa -3'
miRNA:   3'- -GGUACuGAUCUGgG--------------UGCGUCU--------AUCGG- -5'
30198 5' -51.5 NC_006273.1 + 15130 0.66 0.998239
Target:  5'- gCGUGACgGGACgUccgcggccgggACGCAGuuuuGUGGCCg -3'
miRNA:   3'- gGUACUGaUCUGgG-----------UGCGUC----UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 20167 0.68 0.98646
Target:  5'- cCCGaGGCgguaagugAGAUCCugGUgauGAUAGCCg -3'
miRNA:   3'- -GGUaCUGa-------UCUGGGugCGu--CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 21650 0.72 0.926632
Target:  5'- gCC-UGGCgaccgAGACCacgGCGCuGGUGGCCg -3'
miRNA:   3'- -GGuACUGa----UCUGGg--UGCGuCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 22273 0.67 0.995998
Target:  5'- uCCAUcGC-AG-CCaCGCGCuGGUGGCCg -3'
miRNA:   3'- -GGUAcUGaUCuGG-GUGCGuCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 26585 0.76 0.786224
Target:  5'- gCCAUcGcCUGGGCCCAUGCAcauGGUGGUCu -3'
miRNA:   3'- -GGUA-CuGAUCUGGGUGCGU---CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 28955 0.74 0.854242
Target:  5'- cCCGUGACgugcaAGACUaCAUGCuauaAGAUAGCCu -3'
miRNA:   3'- -GGUACUGa----UCUGG-GUGCG----UCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 29066 0.68 0.989404
Target:  5'- cCCu---CUGGGCCCcgguCGCGGGUAGUa -3'
miRNA:   3'- -GGuacuGAUCUGGGu---GCGUCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 29294 0.67 0.992857
Target:  5'- aCCA-GACgcuggAGGgCUACGCGGAUcgaguGCCg -3'
miRNA:   3'- -GGUaCUGa----UCUgGGUGCGUCUAu----CGG- -5'
30198 5' -51.5 NC_006273.1 + 36041 0.7 0.971086
Target:  5'- ---gGGCU--GCCCGCGCAGAUAGa- -3'
miRNA:   3'- gguaCUGAucUGGGUGCGUCUAUCgg -5'
30198 5' -51.5 NC_006273.1 + 36642 0.72 0.915534
Target:  5'- cCCAUGcgggaACUGGcCUgGCgGCGGGUAGCCg -3'
miRNA:   3'- -GGUAC-----UGAUCuGGgUG-CGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 36750 0.67 0.993783
Target:  5'- cUCA-GACcGGGCuCCG-GCGGGUGGCCu -3'
miRNA:   3'- -GGUaCUGaUCUG-GGUgCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 39259 0.72 0.936782
Target:  5'- gCAUGGCgcGGCCCGUGCuGuUGGCCa -3'
miRNA:   3'- gGUACUGauCUGGGUGCGuCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 46043 0.74 0.869394
Target:  5'- ---gGAacugGGGCUCAUGCGGGUGGCCa -3'
miRNA:   3'- gguaCUga--UCUGGGUGCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 48089 0.77 0.699475
Target:  5'- cCCGUGACgGGAUCCgcgACGCAGuucaccaccGUAGCCa -3'
miRNA:   3'- -GGUACUGaUCUGGG---UGCGUC---------UAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.