miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 5' -51.5 NC_006273.1 + 49318 0.71 0.941502
Target:  5'- uCCAUGGuCUGGaugcugccGCCCGCGCGGAcgacGCUg -3'
miRNA:   3'- -GGUACU-GAUC--------UGGGUGCGUCUau--CGG- -5'
30198 5' -51.5 NC_006273.1 + 56271 0.66 0.996573
Target:  5'- aCgGUGGCUGGucuGCUgGgGCGGGUacGGCCg -3'
miRNA:   3'- -GgUACUGAUC---UGGgUgCGUCUA--UCGG- -5'
30198 5' -51.5 NC_006273.1 + 56424 0.69 0.976374
Target:  5'- cCCAggcACgcGGCCCACGCuc-UAGCCg -3'
miRNA:   3'- -GGUac-UGauCUGGGUGCGucuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 56955 0.68 0.98646
Target:  5'- uCCAcGGCgaacAGACCguUGCGGcUGGCCa -3'
miRNA:   3'- -GGUaCUGa---UCUGGguGCGUCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 62720 0.7 0.964998
Target:  5'- gCGUGcaacggcuACUAGAUCUgACGCAGAUGGUa -3'
miRNA:   3'- gGUAC--------UGAUCUGGG-UGCGUCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 67167 0.66 0.998359
Target:  5'- aCGUGAggauCUGcGugCCgccaacgccacguacGCGCAGAUGGUCa -3'
miRNA:   3'- gGUACU----GAU-CugGG---------------UGCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 67473 0.66 0.997078
Target:  5'- gCGUGuCUuGGCCCGgGCAccgAGCCa -3'
miRNA:   3'- gGUACuGAuCUGGGUgCGUcuaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 68802 0.67 0.99461
Target:  5'- ---cGACUGGaACCCggACGC--GUAGCCg -3'
miRNA:   3'- gguaCUGAUC-UGGG--UGCGucUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 70424 0.68 0.991824
Target:  5'- aCCA--GCUGGACCCGcCGCuGcUAcGCCa -3'
miRNA:   3'- -GGUacUGAUCUGGGU-GCGuCuAU-CGG- -5'
30198 5' -51.5 NC_006273.1 + 71466 0.66 0.997394
Target:  5'- aCA-GACUGGACaugCGCGUAuacuugcucagcauGGUGGCCa -3'
miRNA:   3'- gGUaCUGAUCUGg--GUGCGU--------------CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 73324 0.66 0.997905
Target:  5'- gCCAUGACc--GCgCCACaGCAGA--GCCa -3'
miRNA:   3'- -GGUACUGaucUG-GGUG-CGUCUauCGG- -5'
30198 5' -51.5 NC_006273.1 + 73697 0.68 0.991824
Target:  5'- gCCGUGGagcgAGugCCGCcgcagccgGCAGAgcGCCg -3'
miRNA:   3'- -GGUACUga--UCugGGUG--------CGUCUauCGG- -5'
30198 5' -51.5 NC_006273.1 + 74607 0.68 0.991824
Target:  5'- uCCGUGACUGcaGgUCGCGCAGuc-GCCg -3'
miRNA:   3'- -GGUACUGAUc-UgGGUGCGUCuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 78958 0.79 0.638696
Target:  5'- gCCGUcGACU-GACCCACGCGGGaugUAcGCCg -3'
miRNA:   3'- -GGUA-CUGAuCUGGGUGCGUCU---AU-CGG- -5'
30198 5' -51.5 NC_006273.1 + 79043 0.8 0.587821
Target:  5'- gCCA-GGCUGGGCCCACGCGccaccagAGCCu -3'
miRNA:   3'- -GGUaCUGAUCUGGGUGCGUcua----UCGG- -5'
30198 5' -51.5 NC_006273.1 + 79582 0.71 0.941502
Target:  5'- uCCGUGACUcgcGACauggCCACGUAGAUguGGCUc -3'
miRNA:   3'- -GGUACUGAu--CUG----GGUGCGUCUA--UCGG- -5'
30198 5' -51.5 NC_006273.1 + 79884 0.68 0.988002
Target:  5'- gCCGuccUGACUGGA-CgGCGCAGAUuGCa -3'
miRNA:   3'- -GGU---ACUGAUCUgGgUGCGUCUAuCGg -5'
30198 5' -51.5 NC_006273.1 + 80710 0.73 0.897124
Target:  5'- uCCAcGuCUGGGCCCAccugccCGCAGGU-GCCg -3'
miRNA:   3'- -GGUaCuGAUCUGGGU------GCGUCUAuCGG- -5'
30198 5' -51.5 NC_006273.1 + 83598 0.68 0.991824
Target:  5'- uCCAUGAgcCUGGGCgCGCGCGac--GCCg -3'
miRNA:   3'- -GGUACU--GAUCUGgGUGCGUcuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 85671 0.68 0.988002
Target:  5'- cCCAgGACauGACCCACGgCcGAgAGCCa -3'
miRNA:   3'- -GGUaCUGauCUGGGUGC-GuCUaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.