miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 5' -51.5 NC_006273.1 + 235180 0.68 0.98646
Target:  5'- gCGUGugUccccaaGGACCCGCGCu----GCCg -3'
miRNA:   3'- gGUACugA------UCUGGGUGCGucuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 234152 0.72 0.936782
Target:  5'- gCAUGGCgcGGCCCGUGCuGuUGGCCa -3'
miRNA:   3'- gGUACUGauCUGGGUGCGuCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 233387 0.68 0.987094
Target:  5'- gCGUGGCaaUAGGCCuCGagcuugggcuucuccCGCGGAUGGUCg -3'
miRNA:   3'- gGUACUG--AUCUGG-GU---------------GCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 223306 0.7 0.968145
Target:  5'- cCCAgGGCguuucGGGCCCGuCGguGAcAGCCg -3'
miRNA:   3'- -GGUaCUGa----UCUGGGU-GCguCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 219531 0.67 0.995998
Target:  5'- gUCAgagGAUgAGaACCCACGuCAGA-AGCCu -3'
miRNA:   3'- -GGUa--CUGaUC-UGGGUGC-GUCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 212885 0.71 0.940111
Target:  5'- -gGUGugUGGGCgaaacucggcgaaaCCGCGUAGcAUAGCCa -3'
miRNA:   3'- ggUACugAUCUG--------------GGUGCGUC-UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 211638 0.69 0.980915
Target:  5'- ---cGGCUAGACCCGugacgcagcUGCAGA-GGCUa -3'
miRNA:   3'- gguaCUGAUCUGGGU---------GCGUCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 208800 0.73 0.876656
Target:  5'- aCCAUGugcaUGGGCCCAgGC-GAUGGCg -3'
miRNA:   3'- -GGUACug--AUCUGGGUgCGuCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 207936 0.66 0.996573
Target:  5'- aCCGUGguaACggagaggAGGCCUACGUAGcccAUGGUCa -3'
miRNA:   3'- -GGUAC---UGa------UCUGGGUGCGUC---UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 206917 0.7 0.973827
Target:  5'- gCCA-GGCUAGGCCCguacaccagACGCAGA--GCa -3'
miRNA:   3'- -GGUaCUGAUCUGGG---------UGCGUCUauCGg -5'
30198 5' -51.5 NC_006273.1 + 206142 0.67 0.993783
Target:  5'- gCAcgGACaGGuuCCCGCGCAGGguccacagAGCCu -3'
miRNA:   3'- gGUa-CUGaUCu-GGGUGCGUCUa-------UCGG- -5'
30198 5' -51.5 NC_006273.1 + 205139 0.66 0.997078
Target:  5'- -gAUGACgcAGGCCC-CGCAGAacAGUCc -3'
miRNA:   3'- ggUACUGa-UCUGGGuGCGUCUa-UCGG- -5'
30198 5' -51.5 NC_006273.1 + 205085 0.69 0.984946
Target:  5'- aCAUGGaggAGACCCGgGCGGGacguuauauagugagGGCCg -3'
miRNA:   3'- gGUACUga-UCUGGGUgCGUCUa--------------UCGG- -5'
30198 5' -51.5 NC_006273.1 + 199397 0.68 0.991824
Target:  5'- gCGUGAugcCUGGACCCACaaGCGcccGA-AGCCg -3'
miRNA:   3'- gGUACU---GAUCUGGGUG--CGU---CUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 196709 0.7 0.971086
Target:  5'- gCGUGGCaGGAgCUgGCGCAGuacgAGCCg -3'
miRNA:   3'- gGUACUGaUCU-GGgUGCGUCua--UCGG- -5'
30198 5' -51.5 NC_006273.1 + 195242 0.68 0.98646
Target:  5'- gCGUGugUccccaaGGACCCGCGCu----GCCg -3'
miRNA:   3'- gGUACugA------UCUGGGUGCGucuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 191189 1.16 0.0051
Target:  5'- cCCAUGACUAGACCCACGCAGAUAGCCa -3'
miRNA:   3'- -GGUACUGAUCUGGGUGCGUCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 189046 0.66 0.997905
Target:  5'- gCGUGGuggGGGCCCggaccggcgGCGUAGGcGGCCg -3'
miRNA:   3'- gGUACUga-UCUGGG---------UGCGUCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 187892 0.66 0.996573
Target:  5'- ----aGCUGGGCCuCGCGCGGcucGCCg -3'
miRNA:   3'- gguacUGAUCUGG-GUGCGUCuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 187184 0.72 0.921202
Target:  5'- gCGUGugUGGGCCgGCccucgggguGCGGGUGGCg -3'
miRNA:   3'- gGUACugAUCUGGgUG---------CGUCUAUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.