miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30198 5' -51.5 NC_006273.1 + 118197 0.68 0.98646
Target:  5'- aCCGUGugUAcuCCCAC-CAGcgAGCUg -3'
miRNA:   3'- -GGUACugAUcuGGGUGcGUCuaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 126457 0.7 0.971086
Target:  5'- gUCAUGACUgAGugCaaCACGUugggacAGGUGGCCg -3'
miRNA:   3'- -GGUACUGA-UCugG--GUGCG------UCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 138143 0.7 0.971086
Target:  5'- uCCAUGACgcGGCUCAUgGCGGc-GGCCa -3'
miRNA:   3'- -GGUACUGauCUGGGUG-CGUCuaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 196709 0.7 0.971086
Target:  5'- gCGUGGCaGGAgCUgGCGCAGuacgAGCCg -3'
miRNA:   3'- gGUACUGaUCU-GGgUGCGUCua--UCGG- -5'
30198 5' -51.5 NC_006273.1 + 206917 0.7 0.973827
Target:  5'- gCCA-GGCUAGGCCCguacaccagACGCAGA--GCa -3'
miRNA:   3'- -GGUaCUGAUCUGGG---------UGCGUCUauCGg -5'
30198 5' -51.5 NC_006273.1 + 56424 0.69 0.976374
Target:  5'- cCCAggcACgcGGCCCACGCuc-UAGCCg -3'
miRNA:   3'- -GGUac-UGauCUGGGUGCGucuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 211638 0.69 0.980915
Target:  5'- ---cGGCUAGACCCGugacgcagcUGCAGA-GGCUa -3'
miRNA:   3'- gguaCUGAUCUGGGU---------GCGUCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 56955 0.68 0.98646
Target:  5'- uCCAcGGCgaacAGACCguUGCGGcUGGCCa -3'
miRNA:   3'- -GGUaCUGa---UCUGGguGCGUCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 195242 0.68 0.98646
Target:  5'- gCGUGugUccccaaGGACCCGCGCu----GCCg -3'
miRNA:   3'- gGUACugA------UCUGGGUGCGucuauCGG- -5'
30198 5' -51.5 NC_006273.1 + 36041 0.7 0.971086
Target:  5'- ---gGGCU--GCCCGCGCAGAUAGa- -3'
miRNA:   3'- gguaCUGAucUGGGUGCGUCUAUCgg -5'
30198 5' -51.5 NC_006273.1 + 223306 0.7 0.968145
Target:  5'- cCCAgGGCguuucGGGCCCGuCGguGAcAGCCg -3'
miRNA:   3'- -GGUaCUGa----UCUGGGU-GCguCUaUCGG- -5'
30198 5' -51.5 NC_006273.1 + 62720 0.7 0.964998
Target:  5'- gCGUGcaacggcuACUAGAUCUgACGCAGAUGGUa -3'
miRNA:   3'- gGUAC--------UGAUCUGGG-UGCGUCUAUCGg -5'
30198 5' -51.5 NC_006273.1 + 79043 0.8 0.587821
Target:  5'- gCCA-GGCUGGGCCCACGCGccaccagAGCCu -3'
miRNA:   3'- -GGUaCUGAUCUGGGUGCGUcua----UCGG- -5'
30198 5' -51.5 NC_006273.1 + 26585 0.76 0.786224
Target:  5'- gCCAUcGcCUGGGCCCAUGCAcauGGUGGUCu -3'
miRNA:   3'- -GGUA-CuGAUCUGGGUGCGU---CUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 80710 0.73 0.897124
Target:  5'- uCCAcGuCUGGGCCCAccugccCGCAGGU-GCCg -3'
miRNA:   3'- -GGUaCuGAUCUGGGU------GCGUCUAuCGG- -5'
30198 5' -51.5 NC_006273.1 + 21650 0.72 0.926632
Target:  5'- gCC-UGGCgaccgAGACCacgGCGCuGGUGGCCg -3'
miRNA:   3'- -GGuACUGa----UCUGGg--UGCGuCUAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 234152 0.72 0.936782
Target:  5'- gCAUGGCgcGGCCCGUGCuGuUGGCCa -3'
miRNA:   3'- gGUACUGauCUGGGUGCGuCuAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 212885 0.71 0.940111
Target:  5'- -gGUGugUGGGCgaaacucggcgaaaCCGCGUAGcAUAGCCa -3'
miRNA:   3'- ggUACugAUCUG--------------GGUGCGUC-UAUCGG- -5'
30198 5' -51.5 NC_006273.1 + 49318 0.71 0.941502
Target:  5'- uCCAUGGuCUGGaugcugccGCCCGCGCGGAcgacGCUg -3'
miRNA:   3'- -GGUACU-GAUC--------UGGGUGCGUCUau--CGG- -5'
30198 5' -51.5 NC_006273.1 + 155682 0.71 0.958063
Target:  5'- aCCGUGGCUAcGGCCUcacuucGCGCAc--GGCCa -3'
miRNA:   3'- -GGUACUGAU-CUGGG------UGCGUcuaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.