Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30198 | 5' | -51.5 | NC_006273.1 | + | 78958 | 0.79 | 0.638696 |
Target: 5'- gCCGUcGACU-GACCCACGCGGGaugUAcGCCg -3' miRNA: 3'- -GGUA-CUGAuCUGGGUGCGUCU---AU-CGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 153824 | 0.7 | 0.961639 |
Target: 5'- uCCuUGGCgcgAGACCCugGUGGGUcGCg -3' miRNA: 3'- -GGuACUGa--UCUGGGugCGUCUAuCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 1817 | 0.7 | 0.971086 |
Target: 5'- gCGUGGCaGGAgCUgGCGCAGuacgAGCCg -3' miRNA: 3'- gGUACUGaUCU-GGgUGCGUCua--UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 141263 | 0.66 | 0.998526 |
Target: 5'- cCCAUGcccgGCacgGGGCUCGCGCucccuAGGUgcGGCCg -3' miRNA: 3'- -GGUAC----UGa--UCUGGGUGCG-----UCUA--UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 46043 | 0.74 | 0.869394 |
Target: 5'- ---gGAacugGGGCUCAUGCGGGUGGCCa -3' miRNA: 3'- gguaCUga--UCUGGGUGCGUCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 208800 | 0.73 | 0.876656 |
Target: 5'- aCCAUGugcaUGGGCCCAgGC-GAUGGCg -3' miRNA: 3'- -GGUACug--AUCUGGGUgCGuCUAUCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 36642 | 0.72 | 0.915534 |
Target: 5'- cCCAUGcgggaACUGGcCUgGCgGCGGGUAGCCg -3' miRNA: 3'- -GGUAC-----UGAUCuGGgUG-CGUCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 153599 | 0.72 | 0.915534 |
Target: 5'- gCGUGACcggcGGugCgGuCGCGGGUGGCCg -3' miRNA: 3'- gGUACUGa---UCugGgU-GCGUCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 39259 | 0.72 | 0.936782 |
Target: 5'- gCAUGGCgcGGCCCGUGCuGuUGGCCa -3' miRNA: 3'- gGUACUGauCUGGGUGCGuCuAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 167680 | 0.71 | 0.957693 |
Target: 5'- gCguUGAuCUAGGCCCAagaGCAGcucgaguGUGGCCu -3' miRNA: 3'- -GguACU-GAUCUGGGUg--CGUC-------UAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 90279 | 0.71 | 0.945988 |
Target: 5'- gCCcgGGCU--GCCC-CGCAGGUGGUg -3' miRNA: 3'- -GGuaCUGAucUGGGuGCGUCUAUCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 173788 | 0.72 | 0.931825 |
Target: 5'- gCCAUca-UGGACgCGCGCGcGGUGGCCa -3' miRNA: 3'- -GGUAcugAUCUGgGUGCGU-CUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 48089 | 0.77 | 0.699475 |
Target: 5'- cCCGUGACgGGAUCCgcgACGCAGuucaccaccGUAGCCa -3' miRNA: 3'- -GGUACUGaUCUGGG---UGCGUC---------UAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 117744 | 0.71 | 0.950241 |
Target: 5'- gCCA--ACUGGucguaACCCACGCGGGggcGCCg -3' miRNA: 3'- -GGUacUGAUC-----UGGGUGCGUCUau-CGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 163960 | 0.75 | 0.795295 |
Target: 5'- gCCuuuaaGCUGGACCUguuGCGCAuGAUAGCCg -3' miRNA: 3'- -GGuac--UGAUCUGGG---UGCGU-CUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 187184 | 0.72 | 0.921202 |
Target: 5'- gCGUGugUGGGCCgGCccucgggguGCGGGUGGCg -3' miRNA: 3'- gGUACugAUCUGGgUG---------CGUCUAUCGg -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 114628 | 0.71 | 0.954265 |
Target: 5'- gCCGUGuucacCUGGccGCCCugGCAGGccggcauccUGGCCc -3' miRNA: 3'- -GGUACu----GAUC--UGGGugCGUCU---------AUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 2664 | 0.7 | 0.964998 |
Target: 5'- uCUggGACUGGACuuggCCACGguGGUuauggaAGCCg -3' miRNA: 3'- -GGuaCUGAUCUG----GGUGCguCUA------UCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 28955 | 0.74 | 0.854242 |
Target: 5'- cCCGUGACgugcaAGACUaCAUGCuauaAGAUAGCCu -3' miRNA: 3'- -GGUACUGa----UCUGG-GUGCG----UCUAUCGG- -5' |
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30198 | 5' | -51.5 | NC_006273.1 | + | 163441 | 0.72 | 0.915534 |
Target: 5'- gCCGUG-CUGGGCCUcaACGCGGcuuguGCCg -3' miRNA: 3'- -GGUACuGAUCUGGG--UGCGUCuau--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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