miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 25517 0.66 0.999186
Target:  5'- -cGACGUGGUuucACCAUuCCCGUcugugucucACGg -3'
miRNA:   3'- gaUUGCGCCAua-UGGUGuGGGCA---------UGC- -5'
30199 3' -51 NC_006273.1 + 40780 0.66 0.999186
Target:  5'- -gGACGgGGUGUugCggGCGCUCGgggguugGCGg -3'
miRNA:   3'- gaUUGCgCCAUAugG--UGUGGGCa------UGC- -5'
30199 3' -51 NC_006273.1 + 106518 0.66 0.999186
Target:  5'- -aGACGCuGGUAgagaacGCCACGCUgGcGCGa -3'
miRNA:   3'- gaUUGCG-CCAUa-----UGGUGUGGgCaUGC- -5'
30199 3' -51 NC_006273.1 + 113145 0.66 0.999186
Target:  5'- cCUAA-GCGGUGgucGCCACuaucACCCGgGCa -3'
miRNA:   3'- -GAUUgCGCCAUa--UGGUG----UGGGCaUGc -5'
30199 3' -51 NC_006273.1 + 132152 0.66 0.999186
Target:  5'- ----aGCGGUAcGCCGCACaCGcGCGa -3'
miRNA:   3'- gauugCGCCAUaUGGUGUGgGCaUGC- -5'
30199 3' -51 NC_006273.1 + 842 0.66 0.999186
Target:  5'- -gGACGgGGUGUugCggGCGCUCGgggguugGCGg -3'
miRNA:   3'- gaUUGCgCCAUAugG--UGUGGGCa------UGC- -5'
30199 3' -51 NC_006273.1 + 188421 0.66 0.999186
Target:  5'- uCUuACGcCGGcGUcacucagccACCACACCCGUAg- -3'
miRNA:   3'- -GAuUGC-GCCaUA---------UGGUGUGGGCAUgc -5'
30199 3' -51 NC_006273.1 + 142222 0.66 0.999011
Target:  5'- ---cCGCGGUGgACgcaaACGCCCGUuGCGu -3'
miRNA:   3'- gauuGCGCCAUaUGg---UGUGGGCA-UGC- -5'
30199 3' -51 NC_006273.1 + 193131 0.66 0.999011
Target:  5'- -cGACgGCGGUGUcguCgACACgUGUGCGg -3'
miRNA:   3'- gaUUG-CGCCAUAu--GgUGUGgGCAUGC- -5'
30199 3' -51 NC_006273.1 + 19167 0.66 0.999011
Target:  5'- ---cCGCccaUGUGCCGCGCuCCGUACa -3'
miRNA:   3'- gauuGCGcc-AUAUGGUGUG-GGCAUGc -5'
30199 3' -51 NC_006273.1 + 159281 0.66 0.999011
Target:  5'- gUGGCGUGGUGcucAUgACGCCgGUGCc -3'
miRNA:   3'- gAUUGCGCCAUa--UGgUGUGGgCAUGc -5'
30199 3' -51 NC_006273.1 + 51641 0.66 0.998805
Target:  5'- -cGGCGCGG---ACaGCACCCGuUGCGc -3'
miRNA:   3'- gaUUGCGCCauaUGgUGUGGGC-AUGC- -5'
30199 3' -51 NC_006273.1 + 24938 0.66 0.998805
Target:  5'- --cACGCGGcccugGCUugGCCCcUGCGg -3'
miRNA:   3'- gauUGCGCCaua--UGGugUGGGcAUGC- -5'
30199 3' -51 NC_006273.1 + 96230 0.66 0.998805
Target:  5'- -aAGCGaUGGaggACCGCACCCaaaGUGCGc -3'
miRNA:   3'- gaUUGC-GCCauaUGGUGUGGG---CAUGC- -5'
30199 3' -51 NC_006273.1 + 93595 0.66 0.998805
Target:  5'- --uGCGCGGccUGUACCGCgGCuuGaGCGg -3'
miRNA:   3'- gauUGCGCC--AUAUGGUG-UGggCaUGC- -5'
30199 3' -51 NC_006273.1 + 122833 0.66 0.998564
Target:  5'- -gAGCGCGGUA-GCCAgAC-CGUaACGg -3'
miRNA:   3'- gaUUGCGCCAUaUGGUgUGgGCA-UGC- -5'
30199 3' -51 NC_006273.1 + 137903 0.66 0.998564
Target:  5'- aUGACGUGcGaugGUAUUACGCCCG-ACGu -3'
miRNA:   3'- gAUUGCGC-Ca--UAUGGUGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 11074 0.66 0.998564
Target:  5'- -gAACGCGGUucaauuCUACACCCcagACa -3'
miRNA:   3'- gaUUGCGCCAuau---GGUGUGGGca-UGc -5'
30199 3' -51 NC_006273.1 + 177248 0.66 0.998564
Target:  5'- gUggUGCGGag-GCCGCugCgCGUGCc -3'
miRNA:   3'- gAuuGCGCCauaUGGUGugG-GCAUGc -5'
30199 3' -51 NC_006273.1 + 212796 0.66 0.998564
Target:  5'- aUGACGCGccuuucuCCGCaaaaGCCCGUGCa -3'
miRNA:   3'- gAUUGCGCcauau--GGUG----UGGGCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.