miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 96230 0.66 0.998805
Target:  5'- -aAGCGaUGGaggACCGCACCCaaaGUGCGc -3'
miRNA:   3'- gaUUGC-GCCauaUGGUGUGGG---CAUGC- -5'
30199 3' -51 NC_006273.1 + 113145 0.66 0.999186
Target:  5'- cCUAA-GCGGUGgucGCCACuaucACCCGgGCa -3'
miRNA:   3'- -GAUUgCGCCAUa--UGGUG----UGGGCaUGc -5'
30199 3' -51 NC_006273.1 + 202308 0.66 0.998283
Target:  5'- -aGGCGCGGcgAUgacgagcagGCgCGCACCCG-ACGg -3'
miRNA:   3'- gaUUGCGCCa-UA---------UG-GUGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 212796 0.66 0.998564
Target:  5'- aUGACGCGccuuucuCCGCaaaaGCCCGUGCa -3'
miRNA:   3'- gAUUGCGCcauau--GGUG----UGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 137903 0.66 0.998564
Target:  5'- aUGACGUGcGaugGUAUUACGCCCG-ACGu -3'
miRNA:   3'- gAUUGCGC-Ca--UAUGGUGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 137303 0.66 0.998564
Target:  5'- gCUGACGUGGUGcGCUGCGuuCGcACGc -3'
miRNA:   3'- -GAUUGCGCCAUaUGGUGUggGCaUGC- -5'
30199 3' -51 NC_006273.1 + 122833 0.66 0.998564
Target:  5'- -gAGCGCGGUA-GCCAgAC-CGUaACGg -3'
miRNA:   3'- gaUUGCGCCAUaUGGUgUGgGCA-UGC- -5'
30199 3' -51 NC_006273.1 + 132152 0.66 0.999186
Target:  5'- ----aGCGGUAcGCCGCACaCGcGCGa -3'
miRNA:   3'- gauugCGCCAUaUGGUGUGgGCaUGC- -5'
30199 3' -51 NC_006273.1 + 36257 0.67 0.997921
Target:  5'- -gGAUGCGGUuuuucguGUGCUaagACGCCCGggaucGCGg -3'
miRNA:   3'- gaUUGCGCCA-------UAUGG---UGUGGGCa----UGC- -5'
30199 3' -51 NC_006273.1 + 118487 0.67 0.996088
Target:  5'- gUGACccacuCGGg--AUCGCGCCCGUACa -3'
miRNA:   3'- gAUUGc----GCCauaUGGUGUGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 71799 0.67 0.997147
Target:  5'- -cAGCGCGcGcacagcagGCCGUGCCCGUGCGa -3'
miRNA:   3'- gaUUGCGC-Caua-----UGGUGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 204100 0.67 0.996088
Target:  5'- gCUAGCGCGGcc-GCaCGC-CCCGaACGg -3'
miRNA:   3'- -GAUUGCGCCauaUG-GUGuGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 70775 0.67 0.996652
Target:  5'- --cGCGUGGUGaucguggGCCAgGaCCCGUACu -3'
miRNA:   3'- gauUGCGCCAUa------UGGUgU-GGGCAUGc -5'
30199 3' -51 NC_006273.1 + 70283 0.67 0.997539
Target:  5'- uUAACGUGGUGgugGCCAuacgcaacgaagcCACgCGUACc -3'
miRNA:   3'- gAUUGCGCCAUa--UGGU-------------GUGgGCAUGc -5'
30199 3' -51 NC_006273.1 + 16407 0.67 0.99758
Target:  5'- --uACGCGG-GUACCGCACgaCGUgguaGCGa -3'
miRNA:   3'- gauUGCGCCaUAUGGUGUGg-GCA----UGC- -5'
30199 3' -51 NC_006273.1 + 93853 0.67 0.997957
Target:  5'- gUGACGgGGauUGCUAUACCUGUuagACGg -3'
miRNA:   3'- gAUUGCgCCauAUGGUGUGGGCA---UGC- -5'
30199 3' -51 NC_006273.1 + 65709 0.67 0.996088
Target:  5'- gCUAACGCGGcaacgGCCACgGCgCCGUccuucgACGa -3'
miRNA:   3'- -GAUUGCGCCaua--UGGUG-UG-GGCA------UGC- -5'
30199 3' -51 NC_006273.1 + 118732 0.67 0.996088
Target:  5'- gUGGCGCGGgcacggACCGCAa-CGUGCu -3'
miRNA:   3'- gAUUGCGCCaua---UGGUGUggGCAUGc -5'
30199 3' -51 NC_006273.1 + 185308 0.67 0.996088
Target:  5'- -cGGCGUGGUGgugACCA---CCGUGCGa -3'
miRNA:   3'- gaUUGCGCCAUa--UGGUgugGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 218721 0.67 0.997147
Target:  5'- -cGGCGCGGUAggaGCCcacgGCGCCCagcagGUACc -3'
miRNA:   3'- gaUUGCGCCAUa--UGG----UGUGGG-----CAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.