miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 192252 1.11 0.012104
Target:  5'- cCUAACGCGGUAUACCACACCCGUACGg -3'
miRNA:   3'- -GAUUGCGCCAUAUGGUGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 35433 0.75 0.84777
Target:  5'- aUGGCGUGGUAU-CCACGCUCGUuCa -3'
miRNA:   3'- gAUUGCGCCAUAuGGUGUGGGCAuGc -5'
30199 3' -51 NC_006273.1 + 114877 0.74 0.870677
Target:  5'- --uACGCGGUGUACUGCAgCCCGcuagcGCGg -3'
miRNA:   3'- gauUGCGCCAUAUGGUGU-GGGCa----UGC- -5'
30199 3' -51 NC_006273.1 + 134202 0.74 0.882124
Target:  5'- aCUggUGuCGGUAggcgccuacggccGCCACGCCCGUGCc -3'
miRNA:   3'- -GAuuGC-GCCAUa------------UGGUGUGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 81822 0.71 0.954902
Target:  5'- -aGACGCGGUAgaugGCUugACCUgcgccgagcgaGUGCGg -3'
miRNA:   3'- gaUUGCGCCAUa---UGGugUGGG-----------CAUGC- -5'
30199 3' -51 NC_006273.1 + 127982 0.71 0.954902
Target:  5'- -aAAUGCGGUAUGCgGCGCgCCGcACc -3'
miRNA:   3'- gaUUGCGCCAUAUGgUGUG-GGCaUGc -5'
30199 3' -51 NC_006273.1 + 47411 0.71 0.958661
Target:  5'- gCUGGCGgGGUAacaucauCCGCgACUCGUACGa -3'
miRNA:   3'- -GAUUGCgCCAUau-----GGUG-UGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 129212 0.71 0.958661
Target:  5'- uUGACGCGGccuacGUGCaCGCGCCCGguaucUGCGc -3'
miRNA:   3'- gAUUGCGCCa----UAUG-GUGUGGGC-----AUGC- -5'
30199 3' -51 NC_006273.1 + 57116 0.71 0.960102
Target:  5'- aCUGACGCGGuUAUuggcugugaauuccaGCuCGCugCCGUugGu -3'
miRNA:   3'- -GAUUGCGCC-AUA---------------UG-GUGugGGCAugC- -5'
30199 3' -51 NC_006273.1 + 159479 0.71 0.962199
Target:  5'- aUGAuCGCGGag-ACCACACagaCGUGCGc -3'
miRNA:   3'- gAUU-GCGCCauaUGGUGUGg--GCAUGC- -5'
30199 3' -51 NC_006273.1 + 133819 0.71 0.962199
Target:  5'- -gAGCGCGaac-GCCGCGCCCGUcGCGc -3'
miRNA:   3'- gaUUGCGCcauaUGGUGUGGGCA-UGC- -5'
30199 3' -51 NC_006273.1 + 105444 0.71 0.962199
Target:  5'- -gAACGUGGUAggacaGCgCGCGCCCG-GCGg -3'
miRNA:   3'- gaUUGCGCCAUa----UG-GUGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 91975 0.71 0.962199
Target:  5'- --cGCGCGGcagGCCGCGCCggCGUGCu -3'
miRNA:   3'- gauUGCGCCauaUGGUGUGG--GCAUGc -5'
30199 3' -51 NC_006273.1 + 92573 0.71 0.965521
Target:  5'- ---cCGCGGUG---CACGCCCGUGCc -3'
miRNA:   3'- gauuGCGCCAUaugGUGUGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 127259 0.71 0.965521
Target:  5'- -cAACGguugcCGGUcgGCCACuACCUGUACGc -3'
miRNA:   3'- gaUUGC-----GCCAuaUGGUG-UGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 71844 0.71 0.968632
Target:  5'- -aGACGCGGg--ACCGCacGCCgCGUACc -3'
miRNA:   3'- gaUUGCGCCauaUGGUG--UGG-GCAUGc -5'
30199 3' -51 NC_006273.1 + 61720 0.71 0.968932
Target:  5'- -cGGCGCGGUGgaugcccaggacgugACCGCgaGCgCCGUGCGc -3'
miRNA:   3'- gaUUGCGCCAUa--------------UGGUG--UG-GGCAUGC- -5'
30199 3' -51 NC_006273.1 + 44111 0.7 0.971538
Target:  5'- gCUGACGCuaGUGUggggcGCCGCGCCCGUuauCa -3'
miRNA:   3'- -GAUUGCGc-CAUA-----UGGUGUGGGCAu--Gc -5'
30199 3' -51 NC_006273.1 + 173803 0.7 0.974245
Target:  5'- --cGCGCGGUGgccaaacgGCCGCgcgACCCGgccgACGa -3'
miRNA:   3'- gauUGCGCCAUa-------UGGUG---UGGGCa---UGC- -5'
30199 3' -51 NC_006273.1 + 127589 0.7 0.97676
Target:  5'- gUAACGCGGguUGCCACAUCU--ACGa -3'
miRNA:   3'- gAUUGCGCCauAUGGUGUGGGcaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.