miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 112550 0.7 0.97909
Target:  5'- uCUGACGCGGUc-GCCGCgucagcggccGCCgGUGCu -3'
miRNA:   3'- -GAUUGCGCCAuaUGGUG----------UGGgCAUGc -5'
30199 3' -51 NC_006273.1 + 128379 0.7 0.97909
Target:  5'- -gGACGCGGUGUGCUAgCAgUCG-ACGu -3'
miRNA:   3'- gaUUGCGCCAUAUGGU-GUgGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 50911 0.7 0.981242
Target:  5'- aUGACGC--UGUGCCACugCCG-ACGu -3'
miRNA:   3'- gAUUGCGccAUAUGGUGugGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 208731 0.7 0.983224
Target:  5'- gCUGAgGCGGUGUucccaaGCCACGCCguUGCa -3'
miRNA:   3'- -GAUUgCGCCAUA------UGGUGUGGgcAUGc -5'
30199 3' -51 NC_006273.1 + 70693 0.7 0.983971
Target:  5'- -gGGCGCgcggcaacucgagauGGUGUACCcgGCACCCGaGCa -3'
miRNA:   3'- gaUUGCG---------------CCAUAUGG--UGUGGGCaUGc -5'
30199 3' -51 NC_006273.1 + 131105 0.69 0.984514
Target:  5'- -aGACGCGGccgcucUACCggcaucucuuccgcACGCCCGUGCu -3'
miRNA:   3'- gaUUGCGCCau----AUGG--------------UGUGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 25405 0.69 0.984869
Target:  5'- gUGACGCGGUuucGUGuugaaacCCGCGCCCGcuucucacgGCGg -3'
miRNA:   3'- gAUUGCGCCA---UAU-------GGUGUGGGCa--------UGC- -5'
30199 3' -51 NC_006273.1 + 104212 0.69 0.988227
Target:  5'- -cGAUGCGGUccagACuCACGCCCGUcACc -3'
miRNA:   3'- gaUUGCGCCAua--UG-GUGUGGGCA-UGc -5'
30199 3' -51 NC_006273.1 + 199384 0.69 0.989072
Target:  5'- uCUGGCGCGGUcugcgugAUGCCuggacccacaaGCGCCCGaagccgcgcgagcgUGCGa -3'
miRNA:   3'- -GAUUGCGCCA-------UAUGG-----------UGUGGGC--------------AUGC- -5'
30199 3' -51 NC_006273.1 + 149567 0.69 0.989608
Target:  5'- -gGugGCGGcg-GCCGgGCCCGUGg- -3'
miRNA:   3'- gaUugCGCCauaUGGUgUGGGCAUgc -5'
30199 3' -51 NC_006273.1 + 133248 0.68 0.991988
Target:  5'- gUGGCGaCGGc--GCCACugCCGcUGCGa -3'
miRNA:   3'- gAUUGC-GCCauaUGGUGugGGC-AUGC- -5'
30199 3' -51 NC_006273.1 + 87291 0.68 0.991988
Target:  5'- -cAGCGCuGUGguuuCCACGCCCaGUGCc -3'
miRNA:   3'- gaUUGCGcCAUau--GGUGUGGG-CAUGc -5'
30199 3' -51 NC_006273.1 + 56398 0.68 0.991988
Target:  5'- ---uCGCGGg--ACCGCGCC-GUGCGc -3'
miRNA:   3'- gauuGCGCCauaUGGUGUGGgCAUGC- -5'
30199 3' -51 NC_006273.1 + 113150 0.68 0.99261
Target:  5'- -gGGCGCGccgcucagucGCCuACACCCGUACGc -3'
miRNA:   3'- gaUUGCGCcaua------UGG-UGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 103897 0.68 0.993004
Target:  5'- gUAGuCGCGGcgGUugCGCGCCacggCGUACGc -3'
miRNA:   3'- gAUU-GCGCCa-UAugGUGUGG----GCAUGC- -5'
30199 3' -51 NC_006273.1 + 86923 0.68 0.993004
Target:  5'- gCUGGCGCGaGUAgGCCaucaGCGCCCGa--- -3'
miRNA:   3'- -GAUUGCGC-CAUaUGG----UGUGGGCaugc -5'
30199 3' -51 NC_006273.1 + 233747 0.68 0.993651
Target:  5'- --cGCGCGGgGUGcCCACGCCCagccgguugcagcgGUACa -3'
miRNA:   3'- gauUGCGCCaUAU-GGUGUGGG--------------CAUGc -5'
30199 3' -51 NC_006273.1 + 38855 0.68 0.993651
Target:  5'- --cGCGCGGgGUGcCCACGCCCagccgguugcagcgGUACa -3'
miRNA:   3'- gauUGCGCCaUAU-GGUGUGGG--------------CAUGc -5'
30199 3' -51 NC_006273.1 + 38646 0.68 0.993827
Target:  5'- -cGACGCGGgGUGCgGCGCCgacgcgaacggcuCGUACu -3'
miRNA:   3'- gaUUGCGCCaUAUGgUGUGG-------------GCAUGc -5'
30199 3' -51 NC_006273.1 + 233538 0.68 0.993827
Target:  5'- -cGACGCGGgGUGCgGCGCCgacgcgaacggcuCGUACu -3'
miRNA:   3'- gaUUGCGCCaUAUGgUGUGG-------------GCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.