miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 122833 0.66 0.998564
Target:  5'- -gAGCGCGGUA-GCCAgAC-CGUaACGg -3'
miRNA:   3'- gaUUGCGCCAUaUGGUgUGgGCA-UGC- -5'
30199 3' -51 NC_006273.1 + 196169 0.66 0.998283
Target:  5'- -cGACGCGGgcacgcugcUGCCGCucggacGgCCGUACGg -3'
miRNA:   3'- gaUUGCGCCau-------AUGGUG------UgGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 85256 0.66 0.998283
Target:  5'- uUGACGUGGgGUAgUACGCCCGc--- -3'
miRNA:   3'- gAUUGCGCCaUAUgGUGUGGGCaugc -5'
30199 3' -51 NC_006273.1 + 55195 0.66 0.998283
Target:  5'- gUGGCGCGGUaagcggGUGCCACGCUUucaggGUGgGu -3'
miRNA:   3'- gAUUGCGCCA------UAUGGUGUGGG-----CAUgC- -5'
30199 3' -51 NC_006273.1 + 197371 0.66 0.998283
Target:  5'- -gGACGCGcUGcACCuGCACCCGcGCGc -3'
miRNA:   3'- gaUUGCGCcAUaUGG-UGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 1276 0.66 0.998283
Target:  5'- -cGACGCGGgcacgcugcUGCCGCucggacGgCCGUACGg -3'
miRNA:   3'- gaUUGCGCCau-------AUGGUG------UgGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 202308 0.66 0.998283
Target:  5'- -aGGCGCGGcgAUgacgagcagGCgCGCACCCG-ACGg -3'
miRNA:   3'- gaUUGCGCCa-UA---------UG-GUGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 2478 0.66 0.998283
Target:  5'- -gGACGCGcUGcACCuGCACCCGcGCGc -3'
miRNA:   3'- gaUUGCGCcAUaUGG-UGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 147608 0.67 0.997957
Target:  5'- -cGACGCGGUuugAgCACGUCCGgGCGg -3'
miRNA:   3'- gaUUGCGCCAua-UgGUGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 93853 0.67 0.997957
Target:  5'- gUGACGgGGauUGCUAUACCUGUuagACGg -3'
miRNA:   3'- gAUUGCgCCauAUGGUGUGGGCA---UGC- -5'
30199 3' -51 NC_006273.1 + 38566 0.67 0.997957
Target:  5'- --cGCGCGGgcagcACCGCGCCCa-GCGc -3'
miRNA:   3'- gauUGCGCCaua--UGGUGUGGGcaUGC- -5'
30199 3' -51 NC_006273.1 + 140727 0.67 0.997957
Target:  5'- -cGGCgGCGGg--GCCgGCGCuuGUGCGg -3'
miRNA:   3'- gaUUG-CGCCauaUGG-UGUGggCAUGC- -5'
30199 3' -51 NC_006273.1 + 199959 0.67 0.997957
Target:  5'- -gAGCGUGG-AUACCACGCCauCGU-Ca -3'
miRNA:   3'- gaUUGCGCCaUAUGGUGUGG--GCAuGc -5'
30199 3' -51 NC_006273.1 + 233459 0.67 0.997957
Target:  5'- --cGCGCGGgcagcACCGCGCCCa-GCGc -3'
miRNA:   3'- gauUGCGCCaua--UGGUGUGGGcaUGC- -5'
30199 3' -51 NC_006273.1 + 153107 0.67 0.997957
Target:  5'- ---cCGCGGc---CCACGCCCaaGUACGa -3'
miRNA:   3'- gauuGCGCCauauGGUGUGGG--CAUGC- -5'
30199 3' -51 NC_006273.1 + 36257 0.67 0.997921
Target:  5'- -gGAUGCGGUuuuucguGUGCUaagACGCCCGggaucGCGg -3'
miRNA:   3'- gaUUGCGCCA-------UAUGG---UGUGGGCa----UGC- -5'
30199 3' -51 NC_006273.1 + 22380 0.67 0.99758
Target:  5'- -aGACGCGGUucgGCgAaugaaacgucCGCCUGUACGc -3'
miRNA:   3'- gaUUGCGCCAua-UGgU----------GUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 16407 0.67 0.99758
Target:  5'- --uACGCGG-GUACCGCACgaCGUgguaGCGa -3'
miRNA:   3'- gauUGCGCCaUAUGGUGUGg-GCA----UGC- -5'
30199 3' -51 NC_006273.1 + 70283 0.67 0.997539
Target:  5'- uUAACGUGGUGgugGCCAuacgcaacgaagcCACgCGUACc -3'
miRNA:   3'- gAUUGCGCCAUa--UGGU-------------GUGgGCAUGc -5'
30199 3' -51 NC_006273.1 + 71799 0.67 0.997147
Target:  5'- -cAGCGCGcGcacagcagGCCGUGCCCGUGCGa -3'
miRNA:   3'- gaUUGCGC-Caua-----UGGUGUGGGCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.