miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 71799 0.67 0.997147
Target:  5'- -cAGCGCGcGcacagcagGCCGUGCCCGUGCGa -3'
miRNA:   3'- gaUUGCGC-Caua-----UGGUGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 141325 0.67 0.997147
Target:  5'- -cGACGCaGUGcgugGCCgcACACCUGUugGa -3'
miRNA:   3'- gaUUGCGcCAUa---UGG--UGUGGGCAugC- -5'
30199 3' -51 NC_006273.1 + 70775 0.67 0.996652
Target:  5'- --cGCGUGGUGaucguggGCCAgGaCCCGUACu -3'
miRNA:   3'- gauUGCGCCAUa------UGGUgU-GGGCAUGc -5'
30199 3' -51 NC_006273.1 + 211083 0.67 0.996652
Target:  5'- ---cCGUGGUAU--UACACUCGUGCGu -3'
miRNA:   3'- gauuGCGCCAUAugGUGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 204100 0.67 0.996088
Target:  5'- gCUAGCGCGGcc-GCaCGC-CCCGaACGg -3'
miRNA:   3'- -GAUUGCGCCauaUG-GUGuGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 185308 0.67 0.996088
Target:  5'- -cGGCGUGGUGgugACCA---CCGUGCGa -3'
miRNA:   3'- gaUUGCGCCAUa--UGGUgugGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 118732 0.67 0.996088
Target:  5'- gUGGCGCGGgcacggACCGCAa-CGUGCu -3'
miRNA:   3'- gAUUGCGCCaua---UGGUGUggGCAUGc -5'
30199 3' -51 NC_006273.1 + 65709 0.67 0.996088
Target:  5'- gCUAACGCGGcaacgGCCACgGCgCCGUccuucgACGa -3'
miRNA:   3'- -GAUUGCGCCaua--UGGUG-UG-GGCA------UGC- -5'
30199 3' -51 NC_006273.1 + 118487 0.67 0.996088
Target:  5'- gUGACccacuCGGg--AUCGCGCCCGUACa -3'
miRNA:   3'- gAUUGc----GCCauaUGGUGUGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 151050 0.68 0.995448
Target:  5'- ---cUGCGGUAcucgGCCAUggaaaccagcaGCCCGUGCu -3'
miRNA:   3'- gauuGCGCCAUa---UGGUG-----------UGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 17390 0.68 0.995448
Target:  5'- -aGACGCGGU-UGCCGCGC--GUAUGg -3'
miRNA:   3'- gaUUGCGCCAuAUGGUGUGggCAUGC- -5'
30199 3' -51 NC_006273.1 + 214841 0.68 0.995448
Target:  5'- -cAACGUGGUucuUugCACaaACCaCGUACGu -3'
miRNA:   3'- gaUUGCGCCAu--AugGUG--UGG-GCAUGC- -5'
30199 3' -51 NC_006273.1 + 102027 0.68 0.995448
Target:  5'- -gGGCGCGGUAaACUGCucGCUgaCGUGCGg -3'
miRNA:   3'- gaUUGCGCCAUaUGGUG--UGG--GCAUGC- -5'
30199 3' -51 NC_006273.1 + 170448 0.68 0.995241
Target:  5'- -gGACGCGGUuuggcgugcgcGUACCGCagaaagucgaagauGCCCGgACa -3'
miRNA:   3'- gaUUGCGCCA-----------UAUGGUG--------------UGGGCaUGc -5'
30199 3' -51 NC_006273.1 + 205209 0.68 0.994726
Target:  5'- -gAGCGUGGUGUGCgACGggccCCCGgGCu -3'
miRNA:   3'- gaUUGCGCCAUAUGgUGU----GGGCaUGc -5'
30199 3' -51 NC_006273.1 + 164475 0.68 0.994726
Target:  5'- -cGGCGCGGcg-GCUGCugaACUCGUGCGa -3'
miRNA:   3'- gaUUGCGCCauaUGGUG---UGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 149597 0.68 0.994726
Target:  5'- gUGGCgGCGGUcuagAUGCCGCugCCGg--- -3'
miRNA:   3'- gAUUG-CGCCA----UAUGGUGugGGCaugc -5'
30199 3' -51 NC_006273.1 + 8611 0.68 0.993914
Target:  5'- --cACGCGGUGUGCUuuuuaGCACUCGg--- -3'
miRNA:   3'- gauUGCGCCAUAUGG-----UGUGGGCaugc -5'
30199 3' -51 NC_006273.1 + 171568 0.68 0.993914
Target:  5'- ---uCGCGGcGUGCCGCugCCGg--- -3'
miRNA:   3'- gauuGCGCCaUAUGGUGugGGCaugc -5'
30199 3' -51 NC_006273.1 + 190748 0.68 0.993914
Target:  5'- -gGACGCGGUuuucugGCCGCcuuuCCaCGUACc -3'
miRNA:   3'- gaUUGCGCCAua----UGGUGu---GG-GCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.