miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 842 0.66 0.999186
Target:  5'- -gGACGgGGUGUugCggGCGCUCGgggguugGCGg -3'
miRNA:   3'- gaUUGCgCCAUAugG--UGUGGGCa------UGC- -5'
30199 3' -51 NC_006273.1 + 1276 0.66 0.998283
Target:  5'- -cGACGCGGgcacgcugcUGCCGCucggacGgCCGUACGg -3'
miRNA:   3'- gaUUGCGCCau-------AUGGUG------UgGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 2478 0.66 0.998283
Target:  5'- -gGACGCGcUGcACCuGCACCCGcGCGc -3'
miRNA:   3'- gaUUGCGCcAUaUGG-UGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 8611 0.68 0.993914
Target:  5'- --cACGCGGUGUGCUuuuuaGCACUCGg--- -3'
miRNA:   3'- gauUGCGCCAUAUGG-----UGUGGGCaugc -5'
30199 3' -51 NC_006273.1 + 11074 0.66 0.998564
Target:  5'- -gAACGCGGUucaauuCUACACCCcagACa -3'
miRNA:   3'- gaUUGCGCCAuau---GGUGUGGGca-UGc -5'
30199 3' -51 NC_006273.1 + 16407 0.67 0.99758
Target:  5'- --uACGCGG-GUACCGCACgaCGUgguaGCGa -3'
miRNA:   3'- gauUGCGCCaUAUGGUGUGg-GCA----UGC- -5'
30199 3' -51 NC_006273.1 + 17390 0.68 0.995448
Target:  5'- -aGACGCGGU-UGCCGCGC--GUAUGg -3'
miRNA:   3'- gaUUGCGCCAuAUGGUGUGggCAUGC- -5'
30199 3' -51 NC_006273.1 + 19167 0.66 0.999011
Target:  5'- ---cCGCccaUGUGCCGCGCuCCGUACa -3'
miRNA:   3'- gauuGCGcc-AUAUGGUGUG-GGCAUGc -5'
30199 3' -51 NC_006273.1 + 22380 0.67 0.99758
Target:  5'- -aGACGCGGUucgGCgAaugaaacgucCGCCUGUACGc -3'
miRNA:   3'- gaUUGCGCCAua-UGgU----------GUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 24938 0.66 0.998805
Target:  5'- --cACGCGGcccugGCUugGCCCcUGCGg -3'
miRNA:   3'- gauUGCGCCaua--UGGugUGGGcAUGC- -5'
30199 3' -51 NC_006273.1 + 25405 0.69 0.984869
Target:  5'- gUGACGCGGUuucGUGuugaaacCCGCGCCCGcuucucacgGCGg -3'
miRNA:   3'- gAUUGCGCCA---UAU-------GGUGUGGGCa--------UGC- -5'
30199 3' -51 NC_006273.1 + 25517 0.66 0.999186
Target:  5'- -cGACGUGGUuucACCAUuCCCGUcugugucucACGg -3'
miRNA:   3'- gaUUGCGCCAua-UGGUGuGGGCA---------UGC- -5'
30199 3' -51 NC_006273.1 + 35433 0.75 0.84777
Target:  5'- aUGGCGUGGUAU-CCACGCUCGUuCa -3'
miRNA:   3'- gAUUGCGCCAUAuGGUGUGGGCAuGc -5'
30199 3' -51 NC_006273.1 + 36257 0.67 0.997921
Target:  5'- -gGAUGCGGUuuuucguGUGCUaagACGCCCGggaucGCGg -3'
miRNA:   3'- gaUUGCGCCA-------UAUGG---UGUGGGCa----UGC- -5'
30199 3' -51 NC_006273.1 + 38566 0.67 0.997957
Target:  5'- --cGCGCGGgcagcACCGCGCCCa-GCGc -3'
miRNA:   3'- gauUGCGCCaua--UGGUGUGGGcaUGC- -5'
30199 3' -51 NC_006273.1 + 38646 0.68 0.993827
Target:  5'- -cGACGCGGgGUGCgGCGCCgacgcgaacggcuCGUACu -3'
miRNA:   3'- gaUUGCGCCaUAUGgUGUGG-------------GCAUGc -5'
30199 3' -51 NC_006273.1 + 38855 0.68 0.993651
Target:  5'- --cGCGCGGgGUGcCCACGCCCagccgguugcagcgGUACa -3'
miRNA:   3'- gauUGCGCCaUAU-GGUGUGGG--------------CAUGc -5'
30199 3' -51 NC_006273.1 + 40780 0.66 0.999186
Target:  5'- -gGACGgGGUGUugCggGCGCUCGgggguugGCGg -3'
miRNA:   3'- gaUUGCgCCAUAugG--UGUGGGCa------UGC- -5'
30199 3' -51 NC_006273.1 + 44111 0.7 0.971538
Target:  5'- gCUGACGCuaGUGUggggcGCCGCGCCCGUuauCa -3'
miRNA:   3'- -GAUUGCGc-CAUA-----UGGUGUGGGCAu--Gc -5'
30199 3' -51 NC_006273.1 + 47411 0.71 0.958661
Target:  5'- gCUGGCGgGGUAacaucauCCGCgACUCGUACGa -3'
miRNA:   3'- -GAUUGCgCCAUau-----GGUG-UGGGCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.