miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 50911 0.7 0.981242
Target:  5'- aUGACGC--UGUGCCACugCCG-ACGu -3'
miRNA:   3'- gAUUGCGccAUAUGGUGugGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 51641 0.66 0.998805
Target:  5'- -cGGCGCGG---ACaGCACCCGuUGCGc -3'
miRNA:   3'- gaUUGCGCCauaUGgUGUGGGC-AUGC- -5'
30199 3' -51 NC_006273.1 + 55195 0.66 0.998283
Target:  5'- gUGGCGCGGUaagcggGUGCCACGCUUucaggGUGgGu -3'
miRNA:   3'- gAUUGCGCCA------UAUGGUGUGGG-----CAUgC- -5'
30199 3' -51 NC_006273.1 + 56398 0.68 0.991988
Target:  5'- ---uCGCGGg--ACCGCGCC-GUGCGc -3'
miRNA:   3'- gauuGCGCCauaUGGUGUGGgCAUGC- -5'
30199 3' -51 NC_006273.1 + 57116 0.71 0.960102
Target:  5'- aCUGACGCGGuUAUuggcugugaauuccaGCuCGCugCCGUugGu -3'
miRNA:   3'- -GAUUGCGCC-AUA---------------UG-GUGugGGCAugC- -5'
30199 3' -51 NC_006273.1 + 61720 0.71 0.968932
Target:  5'- -cGGCGCGGUGgaugcccaggacgugACCGCgaGCgCCGUGCGc -3'
miRNA:   3'- gaUUGCGCCAUa--------------UGGUG--UG-GGCAUGC- -5'
30199 3' -51 NC_006273.1 + 65709 0.67 0.996088
Target:  5'- gCUAACGCGGcaacgGCCACgGCgCCGUccuucgACGa -3'
miRNA:   3'- -GAUUGCGCCaua--UGGUG-UG-GGCA------UGC- -5'
30199 3' -51 NC_006273.1 + 70283 0.67 0.997539
Target:  5'- uUAACGUGGUGgugGCCAuacgcaacgaagcCACgCGUACc -3'
miRNA:   3'- gAUUGCGCCAUa--UGGU-------------GUGgGCAUGc -5'
30199 3' -51 NC_006273.1 + 70693 0.7 0.983971
Target:  5'- -gGGCGCgcggcaacucgagauGGUGUACCcgGCACCCGaGCa -3'
miRNA:   3'- gaUUGCG---------------CCAUAUGG--UGUGGGCaUGc -5'
30199 3' -51 NC_006273.1 + 70775 0.67 0.996652
Target:  5'- --cGCGUGGUGaucguggGCCAgGaCCCGUACu -3'
miRNA:   3'- gauUGCGCCAUa------UGGUgU-GGGCAUGc -5'
30199 3' -51 NC_006273.1 + 71799 0.67 0.997147
Target:  5'- -cAGCGCGcGcacagcagGCCGUGCCCGUGCGa -3'
miRNA:   3'- gaUUGCGC-Caua-----UGGUGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 71844 0.71 0.968632
Target:  5'- -aGACGCGGg--ACCGCacGCCgCGUACc -3'
miRNA:   3'- gaUUGCGCCauaUGGUG--UGG-GCAUGc -5'
30199 3' -51 NC_006273.1 + 81822 0.71 0.954902
Target:  5'- -aGACGCGGUAgaugGCUugACCUgcgccgagcgaGUGCGg -3'
miRNA:   3'- gaUUGCGCCAUa---UGGugUGGG-----------CAUGC- -5'
30199 3' -51 NC_006273.1 + 85256 0.66 0.998283
Target:  5'- uUGACGUGGgGUAgUACGCCCGc--- -3'
miRNA:   3'- gAUUGCGCCaUAUgGUGUGGGCaugc -5'
30199 3' -51 NC_006273.1 + 86923 0.68 0.993004
Target:  5'- gCUGGCGCGaGUAgGCCaucaGCGCCCGa--- -3'
miRNA:   3'- -GAUUGCGC-CAUaUGG----UGUGGGCaugc -5'
30199 3' -51 NC_006273.1 + 87291 0.68 0.991988
Target:  5'- -cAGCGCuGUGguuuCCACGCCCaGUGCc -3'
miRNA:   3'- gaUUGCGcCAUau--GGUGUGGG-CAUGc -5'
30199 3' -51 NC_006273.1 + 91975 0.71 0.962199
Target:  5'- --cGCGCGGcagGCCGCGCCggCGUGCu -3'
miRNA:   3'- gauUGCGCCauaUGGUGUGG--GCAUGc -5'
30199 3' -51 NC_006273.1 + 92573 0.71 0.965521
Target:  5'- ---cCGCGGUG---CACGCCCGUGCc -3'
miRNA:   3'- gauuGCGCCAUaugGUGUGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 93595 0.66 0.998805
Target:  5'- --uGCGCGGccUGUACCGCgGCuuGaGCGg -3'
miRNA:   3'- gauUGCGCC--AUAUGGUG-UGggCaUGC- -5'
30199 3' -51 NC_006273.1 + 93853 0.67 0.997957
Target:  5'- gUGACGgGGauUGCUAUACCUGUuagACGg -3'
miRNA:   3'- gAUUGCgCCauAUGGUGUGGGCA---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.