miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 233747 0.68 0.993651
Target:  5'- --cGCGCGGgGUGcCCACGCCCagccgguugcagcgGUACa -3'
miRNA:   3'- gauUGCGCCaUAU-GGUGUGGG--------------CAUGc -5'
30199 3' -51 NC_006273.1 + 233538 0.68 0.993827
Target:  5'- -cGACGCGGgGUGCgGCGCCgacgcgaacggcuCGUACu -3'
miRNA:   3'- gaUUGCGCCaUAUGgUGUGG-------------GCAUGc -5'
30199 3' -51 NC_006273.1 + 233459 0.67 0.997957
Target:  5'- --cGCGCGGgcagcACCGCGCCCa-GCGc -3'
miRNA:   3'- gauUGCGCCaua--UGGUGUGGGcaUGC- -5'
30199 3' -51 NC_006273.1 + 218721 0.67 0.997147
Target:  5'- -cGGCGCGGUAggaGCCcacgGCGCCCagcagGUACc -3'
miRNA:   3'- gaUUGCGCCAUa--UGG----UGUGGG-----CAUGc -5'
30199 3' -51 NC_006273.1 + 214841 0.68 0.995448
Target:  5'- -cAACGUGGUucuUugCACaaACCaCGUACGu -3'
miRNA:   3'- gaUUGCGCCAu--AugGUG--UGG-GCAUGC- -5'
30199 3' -51 NC_006273.1 + 212796 0.66 0.998564
Target:  5'- aUGACGCGccuuucuCCGCaaaaGCCCGUGCa -3'
miRNA:   3'- gAUUGCGCcauau--GGUG----UGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 211083 0.67 0.996652
Target:  5'- ---cCGUGGUAU--UACACUCGUGCGu -3'
miRNA:   3'- gauuGCGCCAUAugGUGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 208731 0.7 0.983224
Target:  5'- gCUGAgGCGGUGUucccaaGCCACGCCguUGCa -3'
miRNA:   3'- -GAUUgCGCCAUA------UGGUGUGGgcAUGc -5'
30199 3' -51 NC_006273.1 + 205209 0.68 0.994726
Target:  5'- -gAGCGUGGUGUGCgACGggccCCCGgGCu -3'
miRNA:   3'- gaUUGCGCCAUAUGgUGU----GGGCaUGc -5'
30199 3' -51 NC_006273.1 + 204100 0.67 0.996088
Target:  5'- gCUAGCGCGGcc-GCaCGC-CCCGaACGg -3'
miRNA:   3'- -GAUUGCGCCauaUG-GUGuGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 202308 0.66 0.998283
Target:  5'- -aGGCGCGGcgAUgacgagcagGCgCGCACCCG-ACGg -3'
miRNA:   3'- gaUUGCGCCa-UA---------UG-GUGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 199959 0.67 0.997957
Target:  5'- -gAGCGUGG-AUACCACGCCauCGU-Ca -3'
miRNA:   3'- gaUUGCGCCaUAUGGUGUGG--GCAuGc -5'
30199 3' -51 NC_006273.1 + 199384 0.69 0.989072
Target:  5'- uCUGGCGCGGUcugcgugAUGCCuggacccacaaGCGCCCGaagccgcgcgagcgUGCGa -3'
miRNA:   3'- -GAUUGCGCCA-------UAUGG-----------UGUGGGC--------------AUGC- -5'
30199 3' -51 NC_006273.1 + 197371 0.66 0.998283
Target:  5'- -gGACGCGcUGcACCuGCACCCGcGCGc -3'
miRNA:   3'- gaUUGCGCcAUaUGG-UGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 196169 0.66 0.998283
Target:  5'- -cGACGCGGgcacgcugcUGCCGCucggacGgCCGUACGg -3'
miRNA:   3'- gaUUGCGCCau-------AUGGUG------UgGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 193131 0.66 0.999011
Target:  5'- -cGACgGCGGUGUcguCgACACgUGUGCGg -3'
miRNA:   3'- gaUUG-CGCCAUAu--GgUGUGgGCAUGC- -5'
30199 3' -51 NC_006273.1 + 192252 1.11 0.012104
Target:  5'- cCUAACGCGGUAUACCACACCCGUACGg -3'
miRNA:   3'- -GAUUGCGCCAUAUGGUGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 190748 0.68 0.993914
Target:  5'- -gGACGCGGUuuucugGCCGCcuuuCCaCGUACc -3'
miRNA:   3'- gaUUGCGCCAua----UGGUGu---GG-GCAUGc -5'
30199 3' -51 NC_006273.1 + 188421 0.66 0.999186
Target:  5'- uCUuACGcCGGcGUcacucagccACCACACCCGUAg- -3'
miRNA:   3'- -GAuUGC-GCCaUA---------UGGUGUGGGCAUgc -5'
30199 3' -51 NC_006273.1 + 185308 0.67 0.996088
Target:  5'- -cGGCGUGGUGgugACCA---CCGUGCGa -3'
miRNA:   3'- gaUUGCGCCAUa--UGGUgugGGCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.