miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 165155 0.68 0.993914
Target:  5'- cCUAACaCGuGUuccgugaagAUGCUGCGCCCGUAUGa -3'
miRNA:   3'- -GAUUGcGC-CA---------UAUGGUGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 208731 0.7 0.983224
Target:  5'- gCUGAgGCGGUGUucccaaGCCACGCCguUGCa -3'
miRNA:   3'- -GAUUgCGCCAUA------UGGUGUGGgcAUGc -5'
30199 3' -51 NC_006273.1 + 25405 0.69 0.984869
Target:  5'- gUGACGCGGUuucGUGuugaaacCCGCGCCCGcuucucacgGCGg -3'
miRNA:   3'- gAUUGCGCCA---UAU-------GGUGUGGGCa--------UGC- -5'
30199 3' -51 NC_006273.1 + 56398 0.68 0.991988
Target:  5'- ---uCGCGGg--ACCGCGCC-GUGCGc -3'
miRNA:   3'- gauuGCGCCauaUGGUGUGGgCAUGC- -5'
30199 3' -51 NC_006273.1 + 86923 0.68 0.993004
Target:  5'- gCUGGCGCGaGUAgGCCaucaGCGCCCGa--- -3'
miRNA:   3'- -GAUUGCGC-CAUaUGG----UGUGGGCaugc -5'
30199 3' -51 NC_006273.1 + 103897 0.68 0.993004
Target:  5'- gUAGuCGCGGcgGUugCGCGCCacggCGUACGc -3'
miRNA:   3'- gAUU-GCGCCa-UAugGUGUGG----GCAUGC- -5'
30199 3' -51 NC_006273.1 + 233747 0.68 0.993651
Target:  5'- --cGCGCGGgGUGcCCACGCCCagccgguugcagcgGUACa -3'
miRNA:   3'- gauUGCGCCaUAU-GGUGUGGG--------------CAUGc -5'
30199 3' -51 NC_006273.1 + 233538 0.68 0.993827
Target:  5'- -cGACGCGGgGUGCgGCGCCgacgcgaacggcuCGUACu -3'
miRNA:   3'- gaUUGCGCCaUAUGgUGUGG-------------GCAUGc -5'
30199 3' -51 NC_006273.1 + 8611 0.68 0.993914
Target:  5'- --cACGCGGUGUGCUuuuuaGCACUCGg--- -3'
miRNA:   3'- gauUGCGCCAUAUGG-----UGUGGGCaugc -5'
30199 3' -51 NC_006273.1 + 50911 0.7 0.981242
Target:  5'- aUGACGC--UGUGCCACugCCG-ACGu -3'
miRNA:   3'- gAUUGCGccAUAUGGUGugGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 112550 0.7 0.97909
Target:  5'- uCUGACGCGGUc-GCCGCgucagcggccGCCgGUGCu -3'
miRNA:   3'- -GAUUGCGCCAuaUGGUG----------UGGgCAUGc -5'
30199 3' -51 NC_006273.1 + 44111 0.7 0.971538
Target:  5'- gCUGACGCuaGUGUggggcGCCGCGCCCGUuauCa -3'
miRNA:   3'- -GAUUGCGc-CAUA-----UGGUGUGGGCAu--Gc -5'
30199 3' -51 NC_006273.1 + 114877 0.74 0.870677
Target:  5'- --uACGCGGUGUACUGCAgCCCGcuagcGCGg -3'
miRNA:   3'- gauUGCGCCAUAUGGUGU-GGGCa----UGC- -5'
30199 3' -51 NC_006273.1 + 134202 0.74 0.882124
Target:  5'- aCUggUGuCGGUAggcgccuacggccGCCACGCCCGUGCc -3'
miRNA:   3'- -GAuuGC-GCCAUa------------UGGUGUGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 127982 0.71 0.954902
Target:  5'- -aAAUGCGGUAUGCgGCGCgCCGcACc -3'
miRNA:   3'- gaUUGCGCCAUAUGgUGUG-GGCaUGc -5'
30199 3' -51 NC_006273.1 + 57116 0.71 0.960102
Target:  5'- aCUGACGCGGuUAUuggcugugaauuccaGCuCGCugCCGUugGu -3'
miRNA:   3'- -GAUUGCGCC-AUA---------------UG-GUGugGGCAugC- -5'
30199 3' -51 NC_006273.1 + 159479 0.71 0.962199
Target:  5'- aUGAuCGCGGag-ACCACACagaCGUGCGc -3'
miRNA:   3'- gAUU-GCGCCauaUGGUGUGg--GCAUGC- -5'
30199 3' -51 NC_006273.1 + 127259 0.71 0.965521
Target:  5'- -cAACGguugcCGGUcgGCCACuACCUGUACGc -3'
miRNA:   3'- gaUUGC-----GCCAuaUGGUG-UGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 71844 0.71 0.968632
Target:  5'- -aGACGCGGg--ACCGCacGCCgCGUACc -3'
miRNA:   3'- gaUUGCGCCauaUGGUG--UGG-GCAUGc -5'
30199 3' -51 NC_006273.1 + 61720 0.71 0.968932
Target:  5'- -cGGCGCGGUGgaugcccaggacgugACCGCgaGCgCCGUGCGc -3'
miRNA:   3'- gaUUGCGCCAUa--------------UGGUG--UG-GGCAUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.