miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 3' -51 NC_006273.1 + 35433 0.75 0.84777
Target:  5'- aUGGCGUGGUAU-CCACGCUCGUuCa -3'
miRNA:   3'- gAUUGCGCCAUAuGGUGUGGGCAuGc -5'
30199 3' -51 NC_006273.1 + 133248 0.68 0.991988
Target:  5'- gUGGCGaCGGc--GCCACugCCGcUGCGa -3'
miRNA:   3'- gAUUGC-GCCauaUGGUGugGGC-AUGC- -5'
30199 3' -51 NC_006273.1 + 38855 0.68 0.993651
Target:  5'- --cGCGCGGgGUGcCCACGCCCagccgguugcagcgGUACa -3'
miRNA:   3'- gauUGCGCCaUAU-GGUGUGGG--------------CAUGc -5'
30199 3' -51 NC_006273.1 + 106518 0.66 0.999186
Target:  5'- -aGACGCuGGUAgagaacGCCACGCUgGcGCGa -3'
miRNA:   3'- gaUUGCG-CCAUa-----UGGUGUGGgCaUGC- -5'
30199 3' -51 NC_006273.1 + 105444 0.71 0.962199
Target:  5'- -gAACGUGGUAggacaGCgCGCGCCCG-GCGg -3'
miRNA:   3'- gaUUGCGCCAUa----UG-GUGUGGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 133819 0.71 0.962199
Target:  5'- -gAGCGCGaac-GCCGCGCCCGUcGCGc -3'
miRNA:   3'- gaUUGCGCcauaUGGUGUGGGCA-UGC- -5'
30199 3' -51 NC_006273.1 + 92573 0.71 0.965521
Target:  5'- ---cCGCGGUG---CACGCCCGUGCc -3'
miRNA:   3'- gauuGCGCCAUaugGUGUGGGCAUGc -5'
30199 3' -51 NC_006273.1 + 173803 0.7 0.974245
Target:  5'- --cGCGCGGUGgccaaacgGCCGCgcgACCCGgccgACGa -3'
miRNA:   3'- gauUGCGCCAUa-------UGGUG---UGGGCa---UGC- -5'
30199 3' -51 NC_006273.1 + 70693 0.7 0.983971
Target:  5'- -gGGCGCgcggcaacucgagauGGUGUACCcgGCACCCGaGCa -3'
miRNA:   3'- gaUUGCG---------------CCAUAUGG--UGUGGGCaUGc -5'
30199 3' -51 NC_006273.1 + 87291 0.68 0.991988
Target:  5'- -cAGCGCuGUGguuuCCACGCCCaGUGCc -3'
miRNA:   3'- gaUUGCGcCAUau--GGUGUGGG-CAUGc -5'
30199 3' -51 NC_006273.1 + 104212 0.69 0.988227
Target:  5'- -cGAUGCGGUccagACuCACGCCCGUcACc -3'
miRNA:   3'- gaUUGCGCCAua--UG-GUGUGGGCA-UGc -5'
30199 3' -51 NC_006273.1 + 128379 0.7 0.97909
Target:  5'- -gGACGCGGUGUGCUAgCAgUCG-ACGu -3'
miRNA:   3'- gaUUGCGCCAUAUGGU-GUgGGCaUGC- -5'
30199 3' -51 NC_006273.1 + 81822 0.71 0.954902
Target:  5'- -aGACGCGGUAgaugGCUugACCUgcgccgagcgaGUGCGg -3'
miRNA:   3'- gaUUGCGCCAUa---UGGugUGGG-----------CAUGC- -5'
30199 3' -51 NC_006273.1 + 199384 0.69 0.989072
Target:  5'- uCUGGCGCGGUcugcgugAUGCCuggacccacaaGCGCCCGaagccgcgcgagcgUGCGa -3'
miRNA:   3'- -GAUUGCGCCA-------UAUGG-----------UGUGGGC--------------AUGC- -5'
30199 3' -51 NC_006273.1 + 47411 0.71 0.958661
Target:  5'- gCUGGCGgGGUAacaucauCCGCgACUCGUACGa -3'
miRNA:   3'- -GAUUGCgCCAUau-----GGUG-UGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 127589 0.7 0.97676
Target:  5'- gUAACGCGGguUGCCACAUCU--ACGa -3'
miRNA:   3'- gAUUGCGCCauAUGGUGUGGGcaUGC- -5'
30199 3' -51 NC_006273.1 + 149567 0.69 0.989608
Target:  5'- -gGugGCGGcg-GCCGgGCCCGUGg- -3'
miRNA:   3'- gaUugCGCCauaUGGUgUGGGCAUgc -5'
30199 3' -51 NC_006273.1 + 113150 0.68 0.99261
Target:  5'- -gGGCGCGccgcucagucGCCuACACCCGUACGc -3'
miRNA:   3'- gaUUGCGCcaua------UGG-UGUGGGCAUGC- -5'
30199 3' -51 NC_006273.1 + 129212 0.71 0.958661
Target:  5'- uUGACGCGGccuacGUGCaCGCGCCCGguaucUGCGc -3'
miRNA:   3'- gAUUGCGCCa----UAUG-GUGUGGGC-----AUGC- -5'
30199 3' -51 NC_006273.1 + 91975 0.71 0.962199
Target:  5'- --cGCGCGGcagGCCGCGCCggCGUGCu -3'
miRNA:   3'- gauUGCGCCauaUGGUGUGG--GCAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.