miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 211846 0.66 0.999877
Target:  5'- cGGCcgACGAagUGUGUGaAGAGCGCGUg -3'
miRNA:   3'- -CCGcaUGUU--GCACACcUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 219849 0.66 0.999877
Target:  5'- cGGUGUAgcacCAACGUGuUGGGguccAGACGCu-- -3'
miRNA:   3'- -CCGCAU----GUUGCAC-ACCU----UUUGCGcaa -5'
30199 5' -49 NC_006273.1 + 13059 0.66 0.999877
Target:  5'- cGGCGUACAguGCGcUGcauaGaAAGACGCGUg -3'
miRNA:   3'- -CCGCAUGU--UGC-ACa---CcUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 85680 0.66 0.999877
Target:  5'- cGCGggUGACGuUGUGGAugcggGAACGCGc- -3'
miRNA:   3'- cCGCauGUUGC-ACACCU-----UUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 51922 0.66 0.999877
Target:  5'- cGCGUGCuGACGgacGUGG-GAGCGCa-- -3'
miRNA:   3'- cCGCAUG-UUGCa--CACCuUUUGCGcaa -5'
30199 5' -49 NC_006273.1 + 157376 0.66 0.999842
Target:  5'- uGCGUcgccuGCGACGgcggGUGGAGAugagGCgGCGUg -3'
miRNA:   3'- cCGCA-----UGUUGCa---CACCUUU----UG-CGCAa -5'
30199 5' -49 NC_006273.1 + 179776 0.66 0.999842
Target:  5'- cGGCG-GCGACGUG-GGu---CGCGa- -3'
miRNA:   3'- -CCGCaUGUUGCACaCCuuuuGCGCaa -5'
30199 5' -49 NC_006273.1 + 189849 0.66 0.999799
Target:  5'- uGGCaucUGCGGCaUGgcgggGGGAGACGCGUc -3'
miRNA:   3'- -CCGc--AUGUUGcACa----CCUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 156422 0.66 0.999799
Target:  5'- cGGCGUACAucccGCGUG-GGucagucGACgGCGUc -3'
miRNA:   3'- -CCGCAUGU----UGCACaCCuu----UUG-CGCAa -5'
30199 5' -49 NC_006273.1 + 233352 0.66 0.999799
Target:  5'- gGGCGUGgAGa-UGUGGAGAugGgGg- -3'
miRNA:   3'- -CCGCAUgUUgcACACCUUUugCgCaa -5'
30199 5' -49 NC_006273.1 + 148180 0.66 0.999794
Target:  5'- --aGUGCAcgagccGCGUGUGGucacgcaugccgcGGAACGCGUc -3'
miRNA:   3'- ccgCAUGU------UGCACACC-------------UUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 41507 0.66 0.999678
Target:  5'- aGGCGU-CGGCGUGaGGAugGCaGCGc- -3'
miRNA:   3'- -CCGCAuGUUGCACaCCUuuUG-CGCaa -5'
30199 5' -49 NC_006273.1 + 177348 0.66 0.999678
Target:  5'- cGGCGauccaaAACGacGUGGAAAugGCGg- -3'
miRNA:   3'- -CCGCaug---UUGCa-CACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 4582 0.66 0.99967
Target:  5'- uGGCGacgGCAGCgGUGguggcgcUGGggGugGCGg- -3'
miRNA:   3'- -CCGCa--UGUUG-CAC-------ACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 166513 0.67 0.999605
Target:  5'- uGGCGgcgGCAGCGgugguacugguaacgGUGGu---CGCGUUg -3'
miRNA:   3'- -CCGCa--UGUUGCa--------------CACCuuuuGCGCAA- -5'
30199 5' -49 NC_006273.1 + 234847 0.67 0.999597
Target:  5'- cGGCGgcgguCGGgGUGUGucGggGGCGCGg- -3'
miRNA:   3'- -CCGCau---GUUgCACAC--CuuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 89431 0.67 0.999597
Target:  5'- aGGCGUaggccaGCAGCGgcUGGAAGGCcacgGCGUa -3'
miRNA:   3'- -CCGCA------UGUUGCacACCUUUUG----CGCAa -5'
30199 5' -49 NC_006273.1 + 194909 0.67 0.999597
Target:  5'- cGGCGgcgguCGGgGUGUGucGggGGCGCGg- -3'
miRNA:   3'- -CCGCau---GUUgCACAC--CuuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 16 0.67 0.999597
Target:  5'- cGGCGgcgguCGGgGUGUGucGggGGCGCGg- -3'
miRNA:   3'- -CCGCau---GUUgCACAC--CuuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 123501 0.67 0.999597
Target:  5'- cGGCGUACuGCaggcUGUGGguGGCGUGc- -3'
miRNA:   3'- -CCGCAUGuUGc---ACACCuuUUGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.