Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30199 | 5' | -49 | NC_006273.1 | + | 233352 | 0.66 | 0.999799 |
Target: 5'- gGGCGUGgAGa-UGUGGAGAugGgGg- -3' miRNA: 3'- -CCGCAUgUUgcACACCUUUugCgCaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 179776 | 0.66 | 0.999842 |
Target: 5'- cGGCG-GCGACGUG-GGu---CGCGa- -3' miRNA: 3'- -CCGCaUGUUGCACaCCuuuuGCGCaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 157376 | 0.66 | 0.999842 |
Target: 5'- uGCGUcgccuGCGACGgcggGUGGAGAugagGCgGCGUg -3' miRNA: 3'- cCGCA-----UGUUGCa---CACCUUU----UG-CGCAa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 177348 | 0.66 | 0.999678 |
Target: 5'- cGGCGauccaaAACGacGUGGAAAugGCGg- -3' miRNA: 3'- -CCGCaug---UUGCa-CACCUUUugCGCaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 219849 | 0.66 | 0.999877 |
Target: 5'- cGGUGUAgcacCAACGUGuUGGGguccAGACGCu-- -3' miRNA: 3'- -CCGCAU----GUUGCAC-ACCU----UUUGCGcaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 13059 | 0.66 | 0.999877 |
Target: 5'- cGGCGUACAguGCGcUGcauaGaAAGACGCGUg -3' miRNA: 3'- -CCGCAUGU--UGC-ACa---CcUUUUGCGCAa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 85680 | 0.66 | 0.999877 |
Target: 5'- cGCGggUGACGuUGUGGAugcggGAACGCGc- -3' miRNA: 3'- cCGCauGUUGC-ACACCU-----UUUGCGCaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 51922 | 0.66 | 0.999877 |
Target: 5'- cGCGUGCuGACGgacGUGG-GAGCGCa-- -3' miRNA: 3'- cCGCAUG-UUGCa--CACCuUUUGCGcaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 156422 | 0.66 | 0.999799 |
Target: 5'- cGGCGUACAucccGCGUG-GGucagucGACgGCGUc -3' miRNA: 3'- -CCGCAUGU----UGCACaCCuu----UUG-CGCAa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 148180 | 0.66 | 0.999794 |
Target: 5'- --aGUGCAcgagccGCGUGUGGucacgcaugccgcGGAACGCGUc -3' miRNA: 3'- ccgCAUGU------UGCACACC-------------UUUUGCGCAa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 211846 | 0.66 | 0.999877 |
Target: 5'- cGGCcgACGAagUGUGUGaAGAGCGCGUg -3' miRNA: 3'- -CCGcaUGUU--GCACACcUUUUGCGCAa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 4582 | 0.66 | 0.99967 |
Target: 5'- uGGCGacgGCAGCgGUGguggcgcUGGggGugGCGg- -3' miRNA: 3'- -CCGCa--UGUUG-CAC-------ACCuuUugCGCaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 189849 | 0.66 | 0.999799 |
Target: 5'- uGGCaucUGCGGCaUGgcgggGGGAGACGCGUc -3' miRNA: 3'- -CCGc--AUGUUGcACa----CCUUUUGCGCAa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 41507 | 0.66 | 0.999678 |
Target: 5'- aGGCGU-CGGCGUGaGGAugGCaGCGc- -3' miRNA: 3'- -CCGCAuGUUGCACaCCUuuUG-CGCaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 166513 | 0.67 | 0.999605 |
Target: 5'- uGGCGgcgGCAGCGgugguacugguaacgGUGGu---CGCGUUg -3' miRNA: 3'- -CCGCa--UGUUGCa--------------CACCuuuuGCGCAA- -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 89431 | 0.67 | 0.999597 |
Target: 5'- aGGCGUaggccaGCAGCGgcUGGAAGGCcacgGCGUa -3' miRNA: 3'- -CCGCA------UGUUGCacACCUUUUG----CGCAa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 193359 | 0.67 | 0.999498 |
Target: 5'- gGGCGgAUAACGUGUugcGGAucGugGCGa- -3' miRNA: 3'- -CCGCaUGUUGCACA---CCUu-UugCGCaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 95199 | 0.67 | 0.999498 |
Target: 5'- cGGCGUgGCGGCGUcGUuuuucGGA--GCGCGUc -3' miRNA: 3'- -CCGCA-UGUUGCA-CA-----CCUuuUGCGCAa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 140685 | 0.67 | 0.999237 |
Target: 5'- aGGCG-ACGACGgcggGUGGugGugGUGg- -3' miRNA: 3'- -CCGCaUGUUGCa---CACCuuUugCGCaa -5' |
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30199 | 5' | -49 | NC_006273.1 | + | 210818 | 0.67 | 0.999237 |
Target: 5'- gGGCGcccagACAACGUGacaaGGAAagcccgGACGCGa- -3' miRNA: 3'- -CCGCa----UGUUGCACa---CCUU------UUGCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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