miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 192289 1.09 0.019982
Target:  5'- cGGCGUACAACGUGUGGAAAACGCGUUg -3'
miRNA:   3'- -CCGCAUGUUGCACACCUUUUGCGCAA- -5'
30199 5' -49 NC_006273.1 + 89277 0.8 0.688872
Target:  5'- cGCG-ACGACGUgGUGGAGAACGCGc- -3'
miRNA:   3'- cCGCaUGUUGCA-CACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 154265 0.76 0.864909
Target:  5'- cGUGUACGAggucCGUGUGGAuccgcuGACGCGUUu -3'
miRNA:   3'- cCGCAUGUU----GCACACCUu-----UUGCGCAA- -5'
30199 5' -49 NC_006273.1 + 70677 0.75 0.900436
Target:  5'- cGGUG-GCGGCG-GUGGAGGGCGCGc- -3'
miRNA:   3'- -CCGCaUGUUGCaCACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 34480 0.75 0.91889
Target:  5'- cGGUGUugAAaccgcCGUGUGGAAAGuCGCGg- -3'
miRNA:   3'- -CCGCAugUU-----GCACACCUUUU-GCGCaa -5'
30199 5' -49 NC_006273.1 + 164703 0.74 0.935116
Target:  5'- cGCGUACAACgGUGUGGuccugUGCGUUg -3'
miRNA:   3'- cCGCAUGUUG-CACACCuuuu-GCGCAA- -5'
30199 5' -49 NC_006273.1 + 171571 0.74 0.940028
Target:  5'- cGGCGUGCcGCugccgGUGgaaggGGAAGACGCGg- -3'
miRNA:   3'- -CCGCAUGuUG-----CACa----CCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 116788 0.74 0.949115
Target:  5'- cGGCGcUGCGACGacGUGGAGGcCGCGa- -3'
miRNA:   3'- -CCGC-AUGUUGCa-CACCUUUuGCGCaa -5'
30199 5' -49 NC_006273.1 + 178922 0.73 0.953295
Target:  5'- cGCGaACGACGUGUGacGAGGACGUGg- -3'
miRNA:   3'- cCGCaUGUUGCACAC--CUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 193781 0.73 0.966729
Target:  5'- gGGUGUGCGAaaccgGUGUGGAAGccgaggaggcuaugGCGCGg- -3'
miRNA:   3'- -CCGCAUGUUg----CACACCUUU--------------UGCGCaa -5'
30199 5' -49 NC_006273.1 + 197999 0.72 0.976178
Target:  5'- cGCGgcugAGCGUGUGGAGGACGgGg- -3'
miRNA:   3'- cCGCaug-UUGCACACCUUUUGCgCaa -5'
30199 5' -49 NC_006273.1 + 112860 0.71 0.982909
Target:  5'- cGGCGUGguCAACGcuuUGGAAAACGUGa- -3'
miRNA:   3'- -CCGCAU--GUUGCac-ACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 113438 0.71 0.982909
Target:  5'- -aCGgGCAGCGagGUGGAGAACGUGUc -3'
miRNA:   3'- ccGCaUGUUGCa-CACCUUUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 158212 0.71 0.982909
Target:  5'- aGGuCGUGCAGCGUGaGGcgcGGGCGCGc- -3'
miRNA:   3'- -CC-GCAUGUUGCACaCCu--UUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 73292 0.71 0.986524
Target:  5'- cGGUGUGCGgaGCGUGUcGGAGACGaCGa- -3'
miRNA:   3'- -CCGCAUGU--UGCACAcCUUUUGC-GCaa -5'
30199 5' -49 NC_006273.1 + 145623 0.71 0.986524
Target:  5'- gGGCGgcgguCGugGUgGUGGggGugGCGg- -3'
miRNA:   3'- -CCGCau---GUugCA-CACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 32382 0.71 0.988095
Target:  5'- uGGCGUcuaucgucgccAC-ACGUGUGGAAGACaugGCGa- -3'
miRNA:   3'- -CCGCA-----------UGuUGCACACCUUUUG---CGCaa -5'
30199 5' -49 NC_006273.1 + 112199 0.71 0.988095
Target:  5'- cGCGUGCuucgGCGguUGcUGGAGGACGCGg- -3'
miRNA:   3'- cCGCAUGu---UGC--AC-ACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 37254 0.7 0.991969
Target:  5'- cGGCGgcgACGACGagGaGGAAGACGcCGUg -3'
miRNA:   3'- -CCGCa--UGUUGCa-CaCCUUUUGC-GCAa -5'
30199 5' -49 NC_006273.1 + 149241 0.7 0.99301
Target:  5'- aGGCGUugGACGg--GGAGgAGCGCa-- -3'
miRNA:   3'- -CCGCAugUUGCacaCCUU-UUGCGcaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.