miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 199730 0.7 0.994769
Target:  5'- uGGUGaaACAGCGUGUGGAcuguACGCu-- -3'
miRNA:   3'- -CCGCa-UGUUGCACACCUuu--UGCGcaa -5'
30199 5' -49 NC_006273.1 + 189375 0.69 0.995503
Target:  5'- aGGCG-GCAcGCGUGUGcGggGACGaCGg- -3'
miRNA:   3'- -CCGCaUGU-UGCACAC-CuuUUGC-GCaa -5'
30199 5' -49 NC_006273.1 + 54998 0.69 0.995503
Target:  5'- uGGCcUGCu-CGUagGUGGggGGCGCGUc -3'
miRNA:   3'- -CCGcAUGuuGCA--CACCuuUUGCGCAa -5'
30199 5' -49 NC_006273.1 + 142449 0.69 0.996151
Target:  5'- cGCGUGC-GCGUGUGcGcacACGCGUg -3'
miRNA:   3'- cCGCAUGuUGCACAC-CuuuUGCGCAa -5'
30199 5' -49 NC_006273.1 + 34927 0.69 0.996151
Target:  5'- cGGCGcuggguUAGCG-GUGGAGGugGCGg- -3'
miRNA:   3'- -CCGCau----GUUGCaCACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 147429 0.69 0.99672
Target:  5'- cGGCGUcCGGCGUc-GGggGugGCGg- -3'
miRNA:   3'- -CCGCAuGUUGCAcaCCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 165911 0.69 0.997218
Target:  5'- uGGCuuUAUAACGUGUGGu-GACGaCGUUc -3'
miRNA:   3'- -CCGc-AUGUUGCACACCuuUUGC-GCAA- -5'
30199 5' -49 NC_006273.1 + 193869 0.69 0.997218
Target:  5'- cGGCGaaUGCAGCagacgGUGUucgauGGAGAugGCGUg -3'
miRNA:   3'- -CCGC--AUGUUG-----CACA-----CCUUUugCGCAa -5'
30199 5' -49 NC_006273.1 + 157820 0.68 0.997651
Target:  5'- cGGCGUGCAuaaagggcacgAUGUcGUGGuuAGCgGCGUg -3'
miRNA:   3'- -CCGCAUGU-----------UGCA-CACCuuUUG-CGCAa -5'
30199 5' -49 NC_006273.1 + 172822 0.68 0.998027
Target:  5'- gGGCG-ACAgguaaagguucACG-GUGGAGAuGCGCGUg -3'
miRNA:   3'- -CCGCaUGU-----------UGCaCACCUUU-UGCGCAa -5'
30199 5' -49 NC_006273.1 + 163420 0.68 0.998027
Target:  5'- uGCGUAC-GCGUGggcUGGAAAGC-CGUg -3'
miRNA:   3'- cCGCAUGuUGCAC---ACCUUUUGcGCAa -5'
30199 5' -49 NC_006273.1 + 120597 0.68 0.998027
Target:  5'- uGGCG-GCGACGUuUGGGuuGCGCa-- -3'
miRNA:   3'- -CCGCaUGUUGCAcACCUuuUGCGcaa -5'
30199 5' -49 NC_006273.1 + 144541 0.68 0.998027
Target:  5'- uGCGcGCAGCGcuuuUGUGGA-GGCGCGa- -3'
miRNA:   3'- cCGCaUGUUGC----ACACCUuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 147987 0.68 0.998351
Target:  5'- cGGCG-GCGGCGgugGUGGAGGAgguUGCGc- -3'
miRNA:   3'- -CCGCaUGUUGCa--CACCUUUU---GCGCaa -5'
30199 5' -49 NC_006273.1 + 36931 0.68 0.998629
Target:  5'- cGGCGaucaGCAGcCGUgGUGGAGGaggcuACGCGUg -3'
miRNA:   3'- -CCGCa---UGUU-GCA-CACCUUU-----UGCGCAa -5'
30199 5' -49 NC_006273.1 + 166150 0.68 0.998629
Target:  5'- gGGCGggAgGACGcGUGG-GAGCGCGg- -3'
miRNA:   3'- -CCGCa-UgUUGCaCACCuUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 32213 0.68 0.998629
Target:  5'- aGGuCGUAUucgucauuUGUGUGGGGAACGgGUg -3'
miRNA:   3'- -CC-GCAUGuu------GCACACCUUUUGCgCAa -5'
30199 5' -49 NC_006273.1 + 89962 0.68 0.998629
Target:  5'- aGCGggAUGugGUcgcaGUGGAAAACGCGa- -3'
miRNA:   3'- cCGCa-UGUugCA----CACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 118015 0.68 0.998866
Target:  5'- -aCGUcaauaGCGACG-GUGGAAGugGCGg- -3'
miRNA:   3'- ccGCA-----UGUUGCaCACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 68789 0.68 0.998866
Target:  5'- aGCGgucugGCAGCGacUGGAAcccgGACGCGUa -3'
miRNA:   3'- cCGCa----UGUUGCacACCUU----UUGCGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.