miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30199 5' -49 NC_006273.1 + 95199 0.67 0.999498
Target:  5'- cGGCGUgGCGGCGUcGUuuuucGGA--GCGCGUc -3'
miRNA:   3'- -CCGCA-UGUUGCA-CA-----CCUuuUGCGCAa -5'
30199 5' -49 NC_006273.1 + 136782 0.67 0.999498
Target:  5'- cGCGUACgGACGaGUGGAAGGgugccggugucuCGCGUc -3'
miRNA:   3'- cCGCAUG-UUGCaCACCUUUU------------GCGCAa -5'
30199 5' -49 NC_006273.1 + 149554 0.67 0.999498
Target:  5'- aGCG-GCGGCG-GUGGuAGugGCGUg -3'
miRNA:   3'- cCGCaUGUUGCaCACCuUUugCGCAa -5'
30199 5' -49 NC_006273.1 + 193359 0.67 0.999498
Target:  5'- gGGCGgAUAACGUGUugcGGAucGugGCGa- -3'
miRNA:   3'- -CCGCaUGUUGCACA---CCUu-UugCGCaa -5'
30199 5' -49 NC_006273.1 + 200266 0.67 0.999237
Target:  5'- cGCGUACGACGUcaGcGAGuACGUGUUu -3'
miRNA:   3'- cCGCAUGUUGCAcaC-CUUuUGCGCAA- -5'
30199 5' -49 NC_006273.1 + 210818 0.67 0.999237
Target:  5'- gGGCGcccagACAACGUGacaaGGAAagcccgGACGCGa- -3'
miRNA:   3'- -CCGCa----UGUUGCACa---CCUU------UUGCGCaa -5'
30199 5' -49 NC_006273.1 + 140685 0.67 0.999237
Target:  5'- aGGCG-ACGACGgcggGUGGugGugGUGg- -3'
miRNA:   3'- -CCGCaUGUUGCa---CACCuuUugCGCaa -5'
30199 5' -49 NC_006273.1 + 178825 0.67 0.999067
Target:  5'- gGGCGgcgGCGGCGga-GGAGGAgGCGg- -3'
miRNA:   3'- -CCGCa--UGUUGCacaCCUUUUgCGCaa -5'
30199 5' -49 NC_006273.1 + 118015 0.68 0.998866
Target:  5'- -aCGUcaauaGCGACG-GUGGAAGugGCGg- -3'
miRNA:   3'- ccGCA-----UGUUGCaCACCUUUugCGCaa -5'
30199 5' -49 NC_006273.1 + 68789 0.68 0.998866
Target:  5'- aGCGgucugGCAGCGacUGGAAcccgGACGCGUa -3'
miRNA:   3'- cCGCa----UGUUGCacACCUU----UUGCGCAa -5'
30199 5' -49 NC_006273.1 + 166150 0.68 0.998629
Target:  5'- gGGCGggAgGACGcGUGG-GAGCGCGg- -3'
miRNA:   3'- -CCGCa-UgUUGCaCACCuUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 89962 0.68 0.998629
Target:  5'- aGCGggAUGugGUcgcaGUGGAAAACGCGa- -3'
miRNA:   3'- cCGCa-UGUugCA----CACCUUUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 32213 0.68 0.998629
Target:  5'- aGGuCGUAUucgucauuUGUGUGGGGAACGgGUg -3'
miRNA:   3'- -CC-GCAUGuu------GCACACCUUUUGCgCAa -5'
30199 5' -49 NC_006273.1 + 36931 0.68 0.998629
Target:  5'- cGGCGaucaGCAGcCGUgGUGGAGGaggcuACGCGUg -3'
miRNA:   3'- -CCGCa---UGUU-GCA-CACCUUU-----UGCGCAa -5'
30199 5' -49 NC_006273.1 + 147987 0.68 0.998351
Target:  5'- cGGCG-GCGGCGgugGUGGAGGAgguUGCGc- -3'
miRNA:   3'- -CCGCaUGUUGCa--CACCUUUU---GCGCaa -5'
30199 5' -49 NC_006273.1 + 144541 0.68 0.998027
Target:  5'- uGCGcGCAGCGcuuuUGUGGA-GGCGCGa- -3'
miRNA:   3'- cCGCaUGUUGC----ACACCUuUUGCGCaa -5'
30199 5' -49 NC_006273.1 + 120597 0.68 0.998027
Target:  5'- uGGCG-GCGACGUuUGGGuuGCGCa-- -3'
miRNA:   3'- -CCGCaUGUUGCAcACCUuuUGCGcaa -5'
30199 5' -49 NC_006273.1 + 163420 0.68 0.998027
Target:  5'- uGCGUAC-GCGUGggcUGGAAAGC-CGUg -3'
miRNA:   3'- cCGCAUGuUGCAC---ACCUUUUGcGCAa -5'
30199 5' -49 NC_006273.1 + 172822 0.68 0.998027
Target:  5'- gGGCG-ACAgguaaagguucACG-GUGGAGAuGCGCGUg -3'
miRNA:   3'- -CCGCaUGU-----------UGCaCACCUUU-UGCGCAa -5'
30199 5' -49 NC_006273.1 + 157820 0.68 0.997651
Target:  5'- cGGCGUGCAuaaagggcacgAUGUcGUGGuuAGCgGCGUg -3'
miRNA:   3'- -CCGCAUGU-----------UGCA-CACCuuUUG-CGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.